177 related articles for article (PubMed ID: 35758777)
1. Reconstructing tumor clonal lineage trees incorporating single-nucleotide variants, copy number alterations and structural variations.
Fu X; Lei H; Tao Y; Schwartz R
Bioinformatics; 2022 Jun; 38(Suppl 1):i125-i133. PubMed ID: 35758777
[TBL] [Abstract][Full Text] [Related]
2. Sc-TUSV-ext: Single-cell clonal lineage inference from single nucleotide variants (SNV), copy number alterations (CNA) and structural variants (SV).
Bristy NA; Fu X; Schwartz R
bioRxiv; 2023 Dec; ():. PubMed ID: 38106049
[TBL] [Abstract][Full Text] [Related]
3. Deconvolution and phylogeny inference of structural variations in tumor genomic samples.
Eaton J; Wang J; Schwartz R
Bioinformatics; 2018 Jul; 34(13):i357-i365. PubMed ID: 29950001
[TBL] [Abstract][Full Text] [Related]
4. Meltos: multi-sample tumor phylogeny reconstruction for structural variants.
Ricketts C; Seidman D; Popic V; Hormozdiari F; Batzoglou S; Hajirasouliha I
Bioinformatics; 2020 Feb; 36(4):1082-1090. PubMed ID: 31584621
[TBL] [Abstract][Full Text] [Related]
5. Tumor heterogeneity assessed by sequencing and fluorescence in situ hybridization (FISH) data.
Lei H; Gertz EM; Schäffer AA; Fu X; Tao Y; Heselmeyer-Haddad K; Torres I; Li G; Xu L; Hou Y; Wu K; Shi X; Dean M; Ried T; Schwartz R
Bioinformatics; 2021 Dec; 37(24):4704-4711. PubMed ID: 34289030
[TBL] [Abstract][Full Text] [Related]
6. QuantumClone: clonal assessment of functional mutations in cancer based on a genotype-aware method for clonal reconstruction.
Deveau P; Colmet Daage L; Oldridge D; Bernard V; Bellini A; Chicard M; Clement N; Lapouble E; Combaret V; Boland A; Meyer V; Deleuze JF; Janoueix-Lerosey I; Barillot E; Delattre O; Maris JM; Schleiermacher G; Boeva V
Bioinformatics; 2018 Jun; 34(11):1808-1816. PubMed ID: 29342233
[TBL] [Abstract][Full Text] [Related]
7. BiTSC 2: Bayesian inference of tumor clonal tree by joint analysis of single-cell SNV and CNA data.
Chen Z; Gong F; Wan L; Ma L
Brief Bioinform; 2022 May; 23(3):. PubMed ID: 35368055
[TBL] [Abstract][Full Text] [Related]
8. COMPASS: joint copy number and mutation phylogeny reconstruction from amplicon single-cell sequencing data.
Sollier E; Kuipers J; Takahashi K; Beerenwinkel N; Jahn K
Nat Commun; 2023 Aug; 14(1):4921. PubMed ID: 37582954
[TBL] [Abstract][Full Text] [Related]
9. Principles of Reconstructing the Subclonal Architecture of Cancers.
Dentro SC; Wedge DC; Van Loo P
Cold Spring Harb Perspect Med; 2017 Aug; 7(8):. PubMed ID: 28270531
[TBL] [Abstract][Full Text] [Related]
10. RobustClone: a robust PCA method for tumor clone and evolution inference from single-cell sequencing data.
Chen Z; Gong F; Wan L; Ma L
Bioinformatics; 2020 Jun; 36(11):3299-3306. PubMed ID: 32159762
[TBL] [Abstract][Full Text] [Related]
11. SCARLET: Single-cell tumor phylogeny inference with copy-number constrained mutation losses.
Satas G; Zaccaria S; Mon G; Raphael BJ
Cell Syst; 2020 Apr; 10(4):323-332.e8. PubMed ID: 32864481
[TBL] [Abstract][Full Text] [Related]
12. ConDoR: tumor phylogeny inference with a copy-number constrained mutation loss model.
Sashittal P; Zhang H; Iacobuzio-Donahue CA; Raphael BJ
Genome Biol; 2023 Nov; 24(1):272. PubMed ID: 38037115
[TBL] [Abstract][Full Text] [Related]
13. Tumor phylogeny inference using tree-constrained importance sampling.
Satas G; Raphael BJ
Bioinformatics; 2017 Jul; 33(14):i152-i160. PubMed ID: 28882002
[TBL] [Abstract][Full Text] [Related]
14. SPhyR: tumor phylogeny estimation from single-cell sequencing data under loss and error.
El-Kebir M
Bioinformatics; 2018 Sep; 34(17):i671-i679. PubMed ID: 30423070
[TBL] [Abstract][Full Text] [Related]
15. Inferring clonal evolution of tumors from single nucleotide somatic mutations.
Jiao W; Vembu S; Deshwar AG; Stein L; Morris Q
BMC Bioinformatics; 2014 Feb; 15():35. PubMed ID: 24484323
[TBL] [Abstract][Full Text] [Related]
16. ConDoR: Tumor phylogeny inference with a copy-number constrained mutation loss model.
Sashittal P; Zhang H; Iacobuzio-Donahue CA; Raphael BJ
bioRxiv; 2023 Jan; ():. PubMed ID: 36711528
[TBL] [Abstract][Full Text] [Related]
17. Phylogenetic Copy-Number Factorization of Multiple Tumor Samples.
Zaccaria S; El-Kebir M; Klau GW; Raphael BJ
J Comput Biol; 2018 Jul; 25(7):689-708. PubMed ID: 29658782
[TBL] [Abstract][Full Text] [Related]
18. SCONCE: a method for profiling copy number alterations in cancer evolution using single-cell whole genome sequencing.
Hui S; Nielsen R
Bioinformatics; 2022 Mar; 38(7):1801-1808. PubMed ID: 35080614
[TBL] [Abstract][Full Text] [Related]
19. ClonArch: visualizing the spatial clonal architecture of tumors.
Wu J; El-Kebir M
Bioinformatics; 2020 Jul; 36(Suppl_1):i161-i168. PubMed ID: 32657368
[TBL] [Abstract][Full Text] [Related]
20. A Bayesian method to cluster single-cell RNA sequencing data using copy number alterations.
Milite S; Bergamin R; Patruno L; Calonaci N; Caravagna G
Bioinformatics; 2022 Apr; 38(9):2512-2518. PubMed ID: 35298589
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
