286 related articles for article (PubMed ID: 35773532)
1. Emu: species-level microbial community profiling of full-length 16S rRNA Oxford Nanopore sequencing data.
Curry KD; Wang Q; Nute MG; Tyshaieva A; Reeves E; Soriano S; Wu Q; Graeber E; Finzer P; Mendling W; Savidge T; Villapol S; Dilthey A; Treangen TJ
Nat Methods; 2022 Jul; 19(7):845-853. PubMed ID: 35773532
[TBL] [Abstract][Full Text] [Related]
2. Microbial Community Profiling Protocol with Full-length 16S rRNA Sequences and Emu.
Curry KD; Soriano S; Nute MG; Villapol S; Dilthey A; Treangen TJ
Curr Protoc; 2024 Mar; 4(3):e978. PubMed ID: 38511467
[TBL] [Abstract][Full Text] [Related]
3. The newest Oxford Nanopore R10.4.1 full-length 16S rRNA sequencing enables the accurate resolution of species-level microbial community profiling.
Zhang T; Li H; Ma S; Cao J; Liao H; Huang Q; Chen W
Appl Environ Microbiol; 2023 Oct; 89(10):e0060523. PubMed ID: 37800969
[TBL] [Abstract][Full Text] [Related]
4. Comparative evaluation of analytical pipelines for illumina short- and nanopore long-read 16S rRNA gene amplicon sequencing with mock microbial communities.
Ota Y; Yasunaga K; Mahazu S; Prah I; Nagai S; Hayashi T; Suzuki M; Yoshida M; Hoshino Y; Akeda Y; Suzuki T; Gu Y; Saito R
J Microbiol Methods; 2024 Jun; 221():106929. PubMed ID: 38599390
[TBL] [Abstract][Full Text] [Related]
5. Full-length 16S rRNA gene amplicon analysis of human gut microbiota using MinION™ nanopore sequencing confers species-level resolution.
Matsuo Y; Komiya S; Yasumizu Y; Yasuoka Y; Mizushima K; Takagi T; Kryukov K; Fukuda A; Morimoto Y; Naito Y; Okada H; Bono H; Nakagawa S; Hirota K
BMC Microbiol; 2021 Jan; 21(1):35. PubMed ID: 33499799
[TBL] [Abstract][Full Text] [Related]
6. Species-level bacterial community profiling of the healthy sinonasal microbiome using Pacific Biosciences sequencing of full-length 16S rRNA genes.
Earl JP; Adappa ND; Krol J; Bhat AS; Balashov S; Ehrlich RL; Palmer JN; Workman AD; Blasetti M; Sen B; Hammond J; Cohen NA; Ehrlich GD; Mell JC
Microbiome; 2018 Oct; 6(1):190. PubMed ID: 30352611
[TBL] [Abstract][Full Text] [Related]
7. Comparison of Illumina versus Nanopore 16S rRNA Gene Sequencing of the Human Nasal Microbiota.
Heikema AP; Horst-Kreft D; Boers SA; Jansen R; Hiltemann SD; de Koning W; Kraaij R; de Ridder MAJ; van Houten CB; Bont LJ; Stubbs AP; Hays JP
Genes (Basel); 2020 Sep; 11(9):. PubMed ID: 32967250
[TBL] [Abstract][Full Text] [Related]
8. Full-Length 16S rRNA Gene Analysis Using Long-Read Nanopore Sequencing for Rapid Identification of Bacteria from Clinical Specimens.
Matsuo Y
Methods Mol Biol; 2023; 2632():193-213. PubMed ID: 36781730
[TBL] [Abstract][Full Text] [Related]
9. Microbial Identification Using rRNA Operon Region: Database and Tool for Metataxonomics with Long-Read Sequence.
Seol D; Lim JS; Sung S; Lee YH; Jeong M; Cho S; Kwak W; Kim H
Microbiol Spectr; 2022 Apr; 10(2):e0201721. PubMed ID: 35352997
[TBL] [Abstract][Full Text] [Related]
10. Combining 16S rRNA gene variable regions enables high-resolution microbial community profiling.
Fuks G; Elgart M; Amir A; Zeisel A; Turnbaugh PJ; Soen Y; Shental N
Microbiome; 2018 Jan; 6(1):17. PubMed ID: 29373999
[TBL] [Abstract][Full Text] [Related]
11. Evaluation of 16S rRNA amplicon sequencing using two next-generation sequencing technologies for phylogenetic analysis of the rumen bacterial community in steers.
Myer PR; Kim M; Freetly HC; Smith TPL
J Microbiol Methods; 2016 Aug; 127():132-140. PubMed ID: 27282101
[TBL] [Abstract][Full Text] [Related]
12. Analysis of the mouse gut microbiome using full-length 16S rRNA amplicon sequencing.
Shin J; Lee S; Go MJ; Lee SY; Kim SC; Lee CH; Cho BK
Sci Rep; 2016 Jul; 6():29681. PubMed ID: 27411898
[TBL] [Abstract][Full Text] [Related]
13. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB
Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976
[TBL] [Abstract][Full Text] [Related]
14. A multi-amplicon 16S rRNA sequencing and analysis method for improved taxonomic profiling of bacterial communities.
Schriefer AE; Cliften PF; Hibberd MC; Sawyer C; Brown-Kennerly V; Burcea L; Klotz E; Crosby SD; Gordon JI; Head RD
J Microbiol Methods; 2018 Nov; 154():6-13. PubMed ID: 30273610
[TBL] [Abstract][Full Text] [Related]
15. A comparison between full-length 16S rRNA Oxford nanopore sequencing and Illumina V3-V4 16S rRNA sequencing in head and neck cancer tissues.
Yeo K; Connell J; Bouras G; Smith E; Murphy W; Hodge JC; Krishnan S; Wormald PJ; Valentine R; Psaltis AJ; Vreugde S; Fenix KA
Arch Microbiol; 2024 May; 206(6):248. PubMed ID: 38713383
[TBL] [Abstract][Full Text] [Related]
16. Establishment and assessment of an amplicon sequencing method targeting the 16S-ITS-23S rRNA operon for analysis of the equine gut microbiome.
Kinoshita Y; Niwa H; Uchida-Fujii E; Nukada T
Sci Rep; 2021 Jun; 11(1):11884. PubMed ID: 34088956
[TBL] [Abstract][Full Text] [Related]
17. NanoAmpli-Seq: a workflow for amplicon sequencing for mixed microbial communities on the nanopore sequencing platform.
Calus ST; Ijaz UZ; Pinto AJ
Gigascience; 2018 Dec; 7(12):. PubMed ID: 30476081
[TBL] [Abstract][Full Text] [Related]
18. Sediment-associated microbial community profiling: sample pre-processing through sequential membrane filtration for 16S rRNA amplicon sequencing.
Serrana JM; Watanabe K
BMC Microbiol; 2022 Jan; 22(1):33. PubMed ID: 35057747
[TBL] [Abstract][Full Text] [Related]
19. Species-level resolution of 16S rRNA gene amplicons sequenced through the MinION™ portable nanopore sequencer.
Benítez-Páez A; Portune KJ; Sanz Y
Gigascience; 2016; 5():4. PubMed ID: 26823973
[TBL] [Abstract][Full Text] [Related]
20. High-throughput amplicon sequencing of the full-length 16S rRNA gene with single-nucleotide resolution.
Callahan BJ; Wong J; Heiner C; Oh S; Theriot CM; Gulati AS; McGill SK; Dougherty MK
Nucleic Acids Res; 2019 Oct; 47(18):e103. PubMed ID: 31269198
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]