These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

150 related articles for article (PubMed ID: 35789376)

  • 1. gofasta: command-line utilities for genomic epidemiology research.
    Jackson B
    Bioinformatics; 2022 Aug; 38(16):4033-4035. PubMed ID: 35789376
    [TBL] [Abstract][Full Text] [Related]  

  • 2. SCORPIO: a utility for defining and classifying mutation constellations of virus genomes.
    Colquhoun R; Jackson B; O'Toole Á; Rambaut A
    Bioinformatics; 2023 Oct; 39(10):. PubMed ID: 37713452
    [TBL] [Abstract][Full Text] [Related]  

  • 3. BpWrapper: BioPerl-based sequence and tree utilities for rapid prototyping of bioinformatics pipelines.
    Hernández Y; Bernstein R; Pagan P; Vargas L; McCaig W; Ramrattan G; Akther S; Larracuente A; Di L; Vieira FG; Qiu WG
    BMC Bioinformatics; 2018 Mar; 19(1):76. PubMed ID: 29499649
    [TBL] [Abstract][Full Text] [Related]  

  • 4. DecentTree: scalable Neighbour-Joining for the genomic era.
    Wang W; Barbetti J; Wong T; Thornlow B; Corbett-Detig R; Turakhia Y; Lanfear R; Minh BQ
    Bioinformatics; 2023 Sep; 39(9):. PubMed ID: 37651445
    [TBL] [Abstract][Full Text] [Related]  

  • 5. PhyloCSF++: a fast and user-friendly implementation of PhyloCSF with annotation tools.
    Pockrandt C; Steinegger M; Salzberg SL
    Bioinformatics; 2022 Feb; 38(5):1440-1442. PubMed ID: 34734986
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Unbiased pangenome graphs.
    Garrison E; Guarracino A
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36448683
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Gonomics: uniting high performance and readability for genomics with Go.
    Au EH; Fauci C; Luo Y; Mangan RJ; Snellings DA; Shoben CR; Weaver S; Simpson SK; Lowe CB
    Bioinformatics; 2023 Aug; 39(8):. PubMed ID: 37624924
    [TBL] [Abstract][Full Text] [Related]  

  • 8. COVID-profiler: a webserver for the analysis of SARS-CoV-2 sequencing data.
    Phelan J; Deelder W; Ward D; Campino S; Hibberd ML; Clark TG
    BMC Bioinformatics; 2022 Apr; 23(1):137. PubMed ID: 35428185
    [TBL] [Abstract][Full Text] [Related]  

  • 9. MethylCoder: software pipeline for bisulfite-treated sequences.
    Pedersen B; Hsieh TF; Ibarra C; Fischer RL
    Bioinformatics; 2011 Sep; 27(17):2435-6. PubMed ID: 21724594
    [TBL] [Abstract][Full Text] [Related]  

  • 10. GFAKluge: A C++ library and command line utilities for the Graphical Fragment Assembly formats.
    Dawson ET; Durbin R
    J Open Source Softw; 2019; 4(33):. PubMed ID: 31535074
    [TBL] [Abstract][Full Text] [Related]  

  • 11. InterARTIC: an interactive web application for whole-genome nanopore sequencing analysis of SARS-CoV-2 and other viruses.
    Ferguson JM; Gamaarachchi H; Nguyen T; Gollon A; Tong S; Aquilina-Reid C; Bowen-James R; Deveson IW
    Bioinformatics; 2022 Feb; 38(5):1443-1446. PubMed ID: 34908106
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Coronapp: A web application to annotate and monitor SARS-CoV-2 mutations.
    Mercatelli D; Triboli L; Fornasari E; Ray F; Giorgi FM
    J Med Virol; 2021 May; 93(5):3238-3245. PubMed ID: 33205830
    [TBL] [Abstract][Full Text] [Related]  

  • 13. The Sequence Alignment/Map format and SAMtools.
    Li H; Handsaker B; Wysoker A; Fennell T; Ruan J; Homer N; Marth G; Abecasis G; Durbin R;
    Bioinformatics; 2009 Aug; 25(16):2078-9. PubMed ID: 19505943
    [TBL] [Abstract][Full Text] [Related]  

  • 14. BioKIT: a versatile toolkit for processing and analyzing diverse types of sequence data.
    Steenwyk JL; Buida TJ; Gonçalves C; Goltz DC; Morales G; Mead ME; LaBella AL; Chavez CM; Schmitz JE; Hadjifrangiskou M; Li Y; Rokas A
    Genetics; 2022 Jul; 221(3):. PubMed ID: 35536198
    [TBL] [Abstract][Full Text] [Related]  

  • 15. RadAA: A Command-line Tool for Identification of Radical Amino Acid Changes in Multiple Sequence Alignments.
    Seim I; Baker AM; Chopin LK
    Mol Inform; 2019 Jan; 38(1-2):e1800057. PubMed ID: 30019526
    [TBL] [Abstract][Full Text] [Related]  

  • 16. CovRadar: continuously tracking and filtering SARS-CoV-2 mutations for genomic surveillance.
    Wittig A; Miranda F; Hölzer M; Altenburg T; Bartoszewicz JM; Beyvers S; Dieckmann MA; Genske U; Giese SH; Nowicka M; Richard H; Schiebenhoefer H; Schmachtenberg AJ; Sieben P; Tang M; Tembrockhaus J; Renard BY; Fuchs S
    Bioinformatics; 2022 Sep; 38(17):4223-4225. PubMed ID: 35799354
    [TBL] [Abstract][Full Text] [Related]  

  • 17. GFF Utilities: GffRead and GffCompare.
    Pertea G; Pertea M
    F1000Res; 2020; 9():. PubMed ID: 32489650
    [No Abstract]   [Full Text] [Related]  

  • 18. G-OnRamp: a Galaxy-based platform for collaborative annotation of eukaryotic genomes.
    Liu Y; Sargent L; Leung W; Elgin SCR; Goecks J
    Bioinformatics; 2019 Nov; 35(21):4422-4423. PubMed ID: 31070714
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Motif scraper: a cross-platform, open-source tool for identifying degenerate nucleotide motif matches in FASTA files.
    Roberson EDO
    Bioinformatics; 2018 Nov; 34(22):3926-3928. PubMed ID: 29850891
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Tracking and curating putative SARS-CoV-2 recombinants with RIVET.
    Smith K; Ye C; Turakhia Y
    Bioinformatics; 2023 Sep; 39(9):. PubMed ID: 37651464
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.