168 related articles for article (PubMed ID: 35800774)
1. Plasma contains ultrashort single-stranded DNA in addition to nucleosomal cell-free DNA.
Cheng J; Morselli M; Huang WL; Heo YJ; Pinheiro-Ferreira T; Li F; Wei F; Chia D; Kim Y; He HJ; Cole KD; Su WC; Pellegrini M; Wong DTW
iScience; 2022 Jul; 25(7):104554. PubMed ID: 35800774
[TBL] [Abstract][Full Text] [Related]
2. Single-stranded pre-methylated 5mC adapters uncover the methylation profile of plasma ultrashort Single-stranded cell-free DNA.
Cheng JC; Swarup N; Morselli M; Huang WL; Aziz M; Caggiano C; Kordi M; Patel AA; Chia D; Kim Y; Li F; Wei F; Zaitlen N; Krysan K; Dubinett S; Pellegrini M; Wong DTW
Nucleic Acids Res; 2024 Jun; 52(11):e50. PubMed ID: 38797520
[TBL] [Abstract][Full Text] [Related]
3. Distinct Features of Plasma Ultrashort Single-Stranded Cell-Free DNA as Biomarkers for Lung Cancer Detection.
Cheng J; Swarup N; Li F; Kordi M; Lin CC; Yang SC; Huang WL; Aziz M; Kim Y; Chia D; Yeh YM; Wei F; Zheng D; Zhang L; Pellegrini M; Su WC; Wong DTW
Clin Chem; 2023 Nov; 69(11):1270-1282. PubMed ID: 37725931
[TBL] [Abstract][Full Text] [Related]
4. A review on the impact of single-stranded library preparation on plasma cell-free diversity for cancer detection.
Cheng JC; Swarup N; Wong DTW; Chia D
Front Oncol; 2024; 14():1332004. PubMed ID: 38511142
[TBL] [Abstract][Full Text] [Related]
5. Direct capture and sequencing reveal ultra-short single-stranded DNA in biofluids.
Cheng LY; Dai P; Wu LR; Patel AA; Zhang DY
iScience; 2022 Oct; 25(10):105046. PubMed ID: 36147958
[TBL] [Abstract][Full Text] [Related]
6. Single-stranded DNA library preparation uncovers the origin and diversity of ultrashort cell-free DNA in plasma.
Burnham P; Kim MS; Agbor-Enoh S; Luikart H; Valantine HA; Khush KK; De Vlaminck I
Sci Rep; 2016 Jun; 6():27859. PubMed ID: 27297799
[TBL] [Abstract][Full Text] [Related]
7. Short single-stranded DNAs with putative non-canonical structures comprise a new class of plasma cell-free DNA.
Hisano O; Ito T; Miura F
BMC Biol; 2021 Oct; 19(1):225. PubMed ID: 34649537
[TBL] [Abstract][Full Text] [Related]
8. A ligation-based single-stranded library preparation method to analyze cell-free DNA and synthetic oligos.
Troll CJ; Kapp J; Rao V; Harkins KM; Cole C; Naughton C; Morgan JM; Shapiro B; Green RE
BMC Genomics; 2019 Dec; 20(1):1023. PubMed ID: 31881841
[TBL] [Abstract][Full Text] [Related]
9. Cell-Free DNA Fragmentomics in Liquid Biopsy.
Ding SC; Lo YMD
Diagnostics (Basel); 2022 Apr; 12(4):. PubMed ID: 35454026
[TBL] [Abstract][Full Text] [Related]
10. Jagged Ends of Urinary Cell-Free DNA: Characterization and Feasibility Assessment in Bladder Cancer Detection.
Zhou Z; Cheng SH; Ding SC; Heung MMS; Xie T; Cheng THT; Lam WKJ; Peng W; Teoh JYC; Chiu PKF; Ng CF; Jiang P; Chan KCA; Chiu RWK; Lo YMD
Clin Chem; 2021 Mar; 67(4):621-630. PubMed ID: 33604652
[TBL] [Abstract][Full Text] [Related]
11. Characterizing the molecular composition and diagnostic potential of Mycobacterium tuberculosis urinary cell-free DNA using next-generation sequencing.
Oreskovic A; Waalkes A; Holmes EA; Rosenthal CA; Wilson DPK; Shapiro AE; Drain PK; Lutz BR; Salipante SJ
Int J Infect Dis; 2021 Nov; 112():330-337. PubMed ID: 34562627
[TBL] [Abstract][Full Text] [Related]
12. Investigation of Different Library Preparation and Tissue of Origin Deconvolution Methods for Urine and Plasma cfDNA Methylome Analysis.
Kueng N; Sidler D; Banz V; Largiadèr CR; Ng CKY; Amstutz U
Diagnostics (Basel); 2023 Jul; 13(15):. PubMed ID: 37568867
[TBL] [Abstract][Full Text] [Related]
13. Finding new cancer epigenetic and genetic biomarkers from cell-free DNA by combining SALP-seq and machine learning.
Liu S; Wu J; Xia Q; Liu H; Li W; Xia X; Wang J
Comput Struct Biotechnol J; 2020; 18():1891-1903. PubMed ID: 32774784
[TBL] [Abstract][Full Text] [Related]
14. New insights into structural features and optimal detection of circulating tumor DNA determined by single-strand DNA analysis.
Sanchez C; Snyder MW; Tanos R; Shendure J; Thierry AR
NPJ Genom Med; 2018; 3():31. PubMed ID: 30479833
[TBL] [Abstract][Full Text] [Related]
15. Cell-Free DNA Fragmentation Patterns in a Cancer Cell Line.
Ungerer V; Bronkhorst AJ; Uhlig C; Holdenrieder S
Diagnostics (Basel); 2022 Aug; 12(8):. PubMed ID: 36010246
[TBL] [Abstract][Full Text] [Related]
16. OCRDetector: Accurately Detecting Open Chromatin Regions via Plasma Cell-Free DNA Sequencing Data.
Wang J; Chen L; Zhang X; Tong Y; Zheng T
Int J Mol Sci; 2021 May; 22(11):. PubMed ID: 34071577
[TBL] [Abstract][Full Text] [Related]
17. The Ratio of ssDNA to dsDNA in Circulating Cell-Free DNA Extract is a Stable Indicator for Diagnosis of Gastric Cancer.
Huang X; Zhao Q; An X; Pan J; Zhao L; Shen L; Xu Y; Yuan D
Pathol Oncol Res; 2020 Oct; 26(4):2621-2632. PubMed ID: 32632900
[TBL] [Abstract][Full Text] [Related]
18. Enrichment of short mutant cell-free DNA fragments enhanced detection of pancreatic cancer.
Liu X; Liu L; Ji Y; Li C; Wei T; Yang X; Zhang Y; Cai X; Gao Y; Xu W; Rao S; Jin D; Lou W; Qiu Z; Wang X
EBioMedicine; 2019 Mar; 41():345-356. PubMed ID: 30857943
[TBL] [Abstract][Full Text] [Related]
19. Comprehensive DNA methylation analysis of tissue of origin of plasma cell-free DNA by methylated CpG tandem amplification and sequencing (MCTA-Seq).
Liu X; Ren J; Luo N; Guo H; Zheng Y; Li J; Tang F; Wen L; Peng J
Clin Epigenetics; 2019 Jun; 11(1):93. PubMed ID: 31234922
[TBL] [Abstract][Full Text] [Related]
20. Detecting DNA double-stranded breaks in mammalian genomes by linear amplification-mediated high-throughput genome-wide translocation sequencing.
Hu J; Meyers RM; Dong J; Panchakshari RA; Alt FW; Frock RL
Nat Protoc; 2016 May; 11(5):853-71. PubMed ID: 27031497
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]