These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
229 related articles for article (PubMed ID: 35804300)
21. Simulating the dynamics of targeted capture sequencing with CapSim. Cao MD; Ganesamoorthy D; Zhou C; Coin LJM Bioinformatics; 2018 Mar; 34(5):873-874. PubMed ID: 29092025 [TBL] [Abstract][Full Text] [Related]
22. SimBA: A methodology and tools for evaluating the performance of RNA-Seq bioinformatic pipelines. Audoux J; Salson M; Grosset CF; Beaumeunier S; Holder JM; Commes T; Philippe N BMC Bioinformatics; 2017 Sep; 18(1):428. PubMed ID: 28969586 [TBL] [Abstract][Full Text] [Related]
23. Alignment-free clustering of UMI tagged DNA molecules. Orabi B; Erhan E; McConeghy B; Volik SV; Le Bihan S; Bell R; Collins CC; Chauve C; Hach F Bioinformatics; 2019 Jun; 35(11):1829-1836. PubMed ID: 30351359 [TBL] [Abstract][Full Text] [Related]
24. mInDel: a high-throughput and efficient pipeline for genome-wide InDel marker development. Lv Y; Liu Y; Zhao H BMC Genomics; 2016 Apr; 17():290. PubMed ID: 27079510 [TBL] [Abstract][Full Text] [Related]
25. DelaySSAToolkit.jl: stochastic simulation of reaction systems with time delays in Julia. Fu X; Zhou X; Gu D; Cao Z; Grima R Bioinformatics; 2022 Sep; 38(17):4243-4245. PubMed ID: 35799359 [TBL] [Abstract][Full Text] [Related]
30. NEAT: a framework for building fully automated NGS pipelines and analyses. Schorderet P BMC Bioinformatics; 2016 Feb; 17():53. PubMed ID: 26830846 [TBL] [Abstract][Full Text] [Related]
31. Pipeliner: software to evaluate the performance of bioinformatics pipelines for next-generation resequencing. Nevado B; Perez-Enciso M Mol Ecol Resour; 2015 Jan; 15(1):99-106. PubMed ID: 24890372 [TBL] [Abstract][Full Text] [Related]
32. pIRS: Profile-based Illumina pair-end reads simulator. Hu X; Yuan J; Shi Y; Lu J; Liu B; Li Z; Chen Y; Mu D; Zhang H; Li N; Yue Z; Bai F; Li H; Fan W Bioinformatics; 2012 Jun; 28(11):1533-5. PubMed ID: 22508794 [TBL] [Abstract][Full Text] [Related]
33. RabbitFX: Efficient Framework for FASTA/Q File Parsing on Modern Multi-Core Platforms. Zhang H; Song H; Xu X; Chang Q; Wang M; Wei Y; Yin Z; Schmidt B; Liu W IEEE/ACM Trans Comput Biol Bioinform; 2023; 20(3):2341-2348. PubMed ID: 36327193 [TBL] [Abstract][Full Text] [Related]
34. insiM: in silico Mutator Software for Bioinformatics Pipeline Validation of Clinical Next-Generation Sequencing Assays. Patil SA; Mujacic I; Ritterhouse LL; Segal JP; Kadri S J Mol Diagn; 2019 Jan; 21(1):19-26. PubMed ID: 30273779 [TBL] [Abstract][Full Text] [Related]
35. fastQ_brew: module for analysis, preprocessing, and reformatting of FASTQ sequence data. O'Halloran DM BMC Res Notes; 2017 Jul; 10(1):275. PubMed ID: 28701181 [TBL] [Abstract][Full Text] [Related]
36. EC: an efficient error correction algorithm for short reads. Saha S; Rajasekaran S BMC Bioinformatics; 2015; 16 Suppl 17(Suppl 17):S2. PubMed ID: 26678663 [TBL] [Abstract][Full Text] [Related]
37. FASTQSim: platform-independent data characterization and in silico read generation for NGS datasets. Shcherbina A BMC Res Notes; 2014 Aug; 7():533. PubMed ID: 25123167 [TBL] [Abstract][Full Text] [Related]
38. BEETL-fastq: a searchable compressed archive for DNA reads. Janin L; Schulz-Trieglaff O; Cox AJ Bioinformatics; 2014 Oct; 30(19):2796-801. PubMed ID: 24950811 [TBL] [Abstract][Full Text] [Related]
39. SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package. Joo T; Choi JH; Lee JH; Park SE; Jeon Y; Jung SH; Woo HG BMC Bioinformatics; 2019 Feb; 20(1):90. PubMed ID: 30786880 [TBL] [Abstract][Full Text] [Related]
40. ART: a next-generation sequencing read simulator. Huang W; Li L; Myers JR; Marth GT Bioinformatics; 2012 Feb; 28(4):593-4. PubMed ID: 22199392 [TBL] [Abstract][Full Text] [Related] [Previous] [Next] [New Search]