These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

199 related articles for article (PubMed ID: 35804326)

  • 1. A detailed workflow to develop QIIME2-formatted reference databases for taxonomic analysis of DNA metabarcoding data.
    Dubois B; Debode F; Hautier L; Hulin J; Martin GS; Delvaux A; Janssen E; Mingeot D
    BMC Genom Data; 2022 Jul; 23(1):53. PubMed ID: 35804326
    [TBL] [Abstract][Full Text] [Related]  

  • 2. How reliable is metabarcoding for pollen identification? An evaluation of different taxonomic assignment strategies by cross-validation.
    San Martin G; Hautier L; Mingeot D; Dubois B
    PeerJ; 2024; 12():e16567. PubMed ID: 38313030
    [TBL] [Abstract][Full Text] [Related]  

  • 3. PLANiTS: a curated sequence reference dataset for plant ITS DNA metabarcoding.
    Banchi E; Ametrano CG; Greco S; Stanković D; Muggia L; Pallavicini A
    Database (Oxford); 2020 Jan; 2020():. PubMed ID: 32016319
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Curation of a reference database of COI sequences for insect identification through DNA metabarcoding: COins.
    Magoga G; Forni G; Brunetti M; Meral A; Spada A; De Biase A; Montagna M
    Database (Oxford); 2022 Jul; 2022():. PubMed ID: 35796594
    [TBL] [Abstract][Full Text] [Related]  

  • 5. rCRUX: A Rapid and Versatile Tool for Generating Metabarcoding Reference libraries in R.
    Curd EE; Gal L; Gallego R; Silliman K; Nielsen S; Gold Z
    Environ DNA; 2024 Jan; 6(1):. PubMed ID: 38370872
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Introducing an rbcL and a trnL reference library to aid in the metabarcoding analysis of foraged plants from two semi-arid eastern South African savanna bioregions.
    Botha D; du Plessis M; Siebert F; Barnard S
    PLoS One; 2023; 18(5):e0286144. PubMed ID: 37205700
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Two new computational methods for universal DNA barcoding: a benchmark using barcode sequences of bacteria, archaea, animals, fungi, and land plants.
    Tanabe AS; Toju H
    PLoS One; 2013; 8(10):e76910. PubMed ID: 24204702
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Large-Scale Monitoring of Plants through Environmental DNA Metabarcoding of Soil: Recovery, Resolution, and Annotation of Four DNA Markers.
    Fahner NA; Shokralla S; Baird DJ; Hajibabaei M
    PLoS One; 2016; 11(6):e0157505. PubMed ID: 27310720
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Just keep it simple? Benchmarking the accuracy of taxonomy assignment software in metabarcoding studies.
    Bik HM
    Mol Ecol Resour; 2021 Oct; 21(7):2187-2189. PubMed ID: 34268901
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Optimization of the second internal transcribed spacer (ITS2) for characterizing land plants from soil.
    Timpano EK; Scheible MKR; Meiklejohn KA
    PLoS One; 2020; 15(4):e0231436. PubMed ID: 32298321
    [TBL] [Abstract][Full Text] [Related]  

  • 11. rCRUX: A Rapid and Versatile Tool for Generating Metabarcoding Reference libraries in R.
    Curd EE; Gal L; Gallego R; Nielsen S; Gold Z
    bioRxiv; 2023 Jun; ():. PubMed ID: 37397980
    [TBL] [Abstract][Full Text] [Related]  

  • 12. taxalogue: a toolkit to create comprehensive CO1 reference databases.
    Noll NW; Scherber C; Schäffler L
    PeerJ; 2023; 11():e16253. PubMed ID: 38077427
    [TBL] [Abstract][Full Text] [Related]  

  • 13. crabs-A software program to generate curated reference databases for metabarcoding sequencing data.
    Jeunen GJ; Dowle E; Edgecombe J; von Ammon U; Gemmell NJ; Cross H
    Mol Ecol Resour; 2023 Apr; 23(3):725-738. PubMed ID: 36437603
    [TBL] [Abstract][Full Text] [Related]  

  • 14. An
    Bell KL; Loeffler VM; Brosi BJ
    Appl Plant Sci; 2017 Mar; 5(3):. PubMed ID: 28337390
    [TBL] [Abstract][Full Text] [Related]  

  • 15. An efficient and robust laboratory workflow and tetrapod database for larger scale environmental DNA studies.
    Axtner J; Crampton-Platt A; Hörig LA; Mohamed A; Xu CCY; Yu DW; Wilting A
    Gigascience; 2019 Apr; 8(4):. PubMed ID: 30997489
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A from-benchtop-to-desktop workflow for validating HTS data and for taxonomic identification in diet metabarcoding studies.
    Corse E; Meglécz E; Archambaud G; Ardisson M; Martin JF; Tougard C; Chappaz R; Dubut V
    Mol Ecol Resour; 2017 Nov; 17(6):e146-e159. PubMed ID: 28776936
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Diatom DNA metabarcoding for ecological assessment: Comparison among bioinformatics pipelines used in six European countries reveals the need for standardization.
    Bailet B; Apothéloz-Perret-Gentil L; Baričević A; Chonova T; Franc A; Frigerio JM; Kelly M; Mora D; Pfannkuchen M; Proft S; Ramon M; Vasselon V; Zimmermann J; Kahlert M
    Sci Total Environ; 2020 Nov; 745():140948. PubMed ID: 32736102
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Barcode UK: A complete DNA barcoding resource for the flowering plants and conifers of the United Kingdom.
    Jones L; Twyford AD; Ford CR; Rich TCG; Davies H; Forrest LL; Hart ML; McHaffie H; Brown MR; Hollingsworth PM; de Vere N
    Mol Ecol Resour; 2021 Aug; 21(6):2050-2062. PubMed ID: 33749162
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Be positive: customized reference databases and new, local barcodes balance false taxonomic assignments in metabarcoding studies.
    Mugnai F; Costantini F; Chenuil A; Leduc M; Gutiérrez Ortega JM; Meglécz E
    PeerJ; 2023; 11():e14616. PubMed ID: 36643652
    [TBL] [Abstract][Full Text] [Related]  

  • 20. MARES, a replicable pipeline and curated reference database for marine eukaryote metabarcoding.
    Arranz V; Pearman WS; Aguirre JD; Liggins L
    Sci Data; 2020 Jul; 7(1):209. PubMed ID: 32620910
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.