These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

192 related articles for article (PubMed ID: 35811804)

  • 1. Recommendations for the formatting of Variant Call Format (VCF) files to make plant genotyping data FAIR.
    Beier S; Fiebig A; Pommier C; Liyanage I; Lange M; Kersey PJ; Weise S; Finkers R; Koylass B; Cezard T; Courtot M; Contreras-Moreira B; Naamati G; Dyer S; Scholz U
    F1000Res; 2022; 11():. PubMed ID: 35811804
    [TBL] [Abstract][Full Text] [Related]  

  • 2. cyvcf2: fast, flexible variant analysis with Python.
    Pedersen BS; Quinlan AR
    Bioinformatics; 2017 Jun; 33(12):1867-1869. PubMed ID: 28165109
    [TBL] [Abstract][Full Text] [Related]  

  • 3. VCF observer: a user-friendly software tool for preliminary VCF file analysis and comparison.
    Emül AA; Ergün MA; Ertürk RA; Çinal Ö; Baysan M
    BMC Bioinformatics; 2024 Sep; 25(1):290. PubMed ID: 39227760
    [TBL] [Abstract][Full Text] [Related]  

  • 4. VCF-Miner: GUI-based application for mining variants and annotations stored in VCF files.
    Hart SN; Duffy P; Quest DJ; Hossain A; Meiners MA; Kocher JP
    Brief Bioinform; 2016 Mar; 17(2):346-51. PubMed ID: 26210358
    [TBL] [Abstract][Full Text] [Related]  

  • 5. The Scalable Variant Call Representation: Enabling Genetic Analysis Beyond One Million Genomes.
    Poterba T; Vittal C; King D; Goldstein D; Goldstein JI; Schultz P; Karczewski KJ; Seed C; Neale BM
    bioRxiv; 2024 Jan; ():. PubMed ID: 38260295
    [TBL] [Abstract][Full Text] [Related]  

  • 6. vcfr: a package to manipulate and visualize variant call format data in R.
    Knaus BJ; Grünwald NJ
    Mol Ecol Resour; 2017 Jan; 17(1):44-53. PubMed ID: 27401132
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A spectrum of free software tools for processing the VCF variant call format: vcflib, bio-vcf, cyvcf2, hts-nim and slivar.
    Garrison E; Kronenberg ZN; Dawson ET; Pedersen BS; Prins P
    PLoS Comput Biol; 2022 May; 18(5):e1009123. PubMed ID: 35639788
    [TBL] [Abstract][Full Text] [Related]  

  • 8. VCF-kit: assorted utilities for the variant call format.
    Cook DE; Andersen EC
    Bioinformatics; 2017 May; 33(10):1581-1582. PubMed ID: 28093408
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Variant Tool Chest: an improved tool to analyze and manipulate variant call format (VCF) files.
    Ebbert MT; Wadsworth ME; Boehme KL; Hoyt KL; Sharp AR; O'Fallon BD; Kauwe JS; Ridge PG
    BMC Bioinformatics; 2014; 15 Suppl 7(Suppl 7):S12. PubMed ID: 25080132
    [TBL] [Abstract][Full Text] [Related]  

  • 10. The Allele Catalog Tool: a web-based interactive tool for allele discovery and analysis.
    Chan YO; Dietz N; Zeng S; Wang J; Flint-Garcia S; Salazar-Vidal MN; Škrabišová M; Bilyeu K; Joshi T
    BMC Genomics; 2023 Mar; 24(1):107. PubMed ID: 36899307
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Analysis-ready VCF at Biobank scale using Zarr.
    Czech E; Millar TR; Tyler W; White T; Jeffery B; Miles A; Tallman S; Wojdyla R; Zabad S; Hammerbacher J; Kelleher J
    bioRxiv; 2024 Nov; ():. PubMed ID: 38915693
    [TBL] [Abstract][Full Text] [Related]  

  • 12. isa4j: a scalable Java library for creating ISA-Tab metadata.
    Psaroudakis D; Liu F; König P; Scholz U; Junker A; Lange M; Arend D
    F1000Res; 2020; 9():. PubMed ID: 33728038
    [TBL] [Abstract][Full Text] [Related]  

  • 13. MARMoSET - Extracting Publication-ready Mass Spectrometry Metadata from RAW Files.
    Kiweler M; Looso M; Graumann J
    Mol Cell Proteomics; 2019 Aug; 18(8):1700-1702. PubMed ID: 31097673
    [TBL] [Abstract][Full Text] [Related]  

  • 14. re-Searcher: GUI-based bioinformatics tool for simplified genomics data mining of VCF files.
    Karabayev D; Molkenov A; Yerulanuly K; Kabimoldayev I; Daniyarov A; Sharip A; Seisenova A; Zhumadilov Z; Kairov U
    PeerJ; 2021; 9():e11333. PubMed ID: 33987016
    [TBL] [Abstract][Full Text] [Related]  

  • 15. GSC: efficient lossless compression of VCF files with fast query.
    Luo X; Chen Y; Liu L; Ding L; Li Y; Li S; Zhang Y; Zhu Z
    Gigascience; 2024 Jan; 13():. PubMed ID: 39028587
    [TBL] [Abstract][Full Text] [Related]  

  • 16. vcf2fhir: a utility to convert VCF files into HL7 FHIR format for genomics-EHR integration.
    Dolin RH; Gothi SR; Boxwala A; Heale BSE; Husami A; Jones J; Khangar H; Londhe S; Naeymi-Rad F; Rao S; Rapchak B; Shalaby J; Suraj V; Xie N; Chamala S; Alterovitz G
    BMC Bioinformatics; 2021 Mar; 22(1):104. PubMed ID: 33653260
    [TBL] [Abstract][Full Text] [Related]  

  • 17. SeqArray-a storage-efficient high-performance data format for WGS variant calls.
    Zheng X; Gogarten SM; Lawrence M; Stilp A; Conomos MP; Weir BS; Laurie C; Levine D
    Bioinformatics; 2017 Aug; 33(15):2251-2257. PubMed ID: 28334390
    [TBL] [Abstract][Full Text] [Related]  

  • 18. FAIR data station for lightweight metadata management and validation of omics studies.
    Nijsse B; Schaap PJ; Koehorst JJ
    Gigascience; 2022 Dec; 12():. PubMed ID: 36879493
    [TBL] [Abstract][Full Text] [Related]  

  • 19. FAIR data sharing: The roles of common data elements and harmonization.
    Kush RD; Warzel D; Kush MA; Sherman A; Navarro EA; Fitzmartin R; Pétavy F; Galvez J; Becnel LB; Zhou FL; Harmon N; Jauregui B; Jackson T; Hudson L
    J Biomed Inform; 2020 Jul; 107():103421. PubMed ID: 32407878
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Experimental Directory Structure (Exdir): An Alternative to HDF5 Without Introducing a New File Format.
    Dragly SA; Hobbi Mobarhan M; Lepperød ME; Tennøe S; Fyhn M; Hafting T; Malthe-Sørenssen A
    Front Neuroinform; 2018; 12():16. PubMed ID: 29706879
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.