802 related articles for article (PubMed ID: 35819265)
1. Comparison Between Full-Length 16S rRNA Metabarcoding and Whole Metagenome Sequencing Suggests the Use of Either Is Suitable for Large-Scale Microbiome Studies.
Rubiola S; Macori G; Civera T; Fanning S; Mitchell M; Chiesa F
Foodborne Pathog Dis; 2022 Jul; 19(7):495-504. PubMed ID: 35819265
[TBL] [Abstract][Full Text] [Related]
2. Diversity and composition of gut microbiome of cervical cancer patients: Do results of 16S rRNA sequencing and whole genome sequencing approaches align?
Biegert G; El Alam MB; Karpinets T; Wu X; Sims TT; Yoshida-Court K; Lynn EJ; Yue J; Medrano AD; Petrosino J; Mezzari MP; Ajami NJ; Solley T; Ahmed-Kaddar M; Klopp AH; Colbert LE
J Microbiol Methods; 2021 Jun; 185():106213. PubMed ID: 33785357
[TBL] [Abstract][Full Text] [Related]
3. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB
Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976
[TBL] [Abstract][Full Text] [Related]
4. Microbial Identification Using rRNA Operon Region: Database and Tool for Metataxonomics with Long-Read Sequence.
Seol D; Lim JS; Sung S; Lee YH; Jeong M; Cho S; Kwak W; Kim H
Microbiol Spectr; 2022 Apr; 10(2):e0201721. PubMed ID: 35352997
[TBL] [Abstract][Full Text] [Related]
5. rpoB, a promising marker for analyzing the diversity of bacterial communities by amplicon sequencing.
Ogier JC; Pagès S; Galan M; Barret M; Gaudriault S
BMC Microbiol; 2019 Jul; 19(1):171. PubMed ID: 31357928
[TBL] [Abstract][Full Text] [Related]
6. Comparison between 16S rRNA and shotgun sequencing data for the taxonomic characterization of the gut microbiota.
Durazzi F; Sala C; Castellani G; Manfreda G; Remondini D; De Cesare A
Sci Rep; 2021 Feb; 11(1):3030. PubMed ID: 33542369
[TBL] [Abstract][Full Text] [Related]
7. Species-level bacterial community profiling of the healthy sinonasal microbiome using Pacific Biosciences sequencing of full-length 16S rRNA genes.
Earl JP; Adappa ND; Krol J; Bhat AS; Balashov S; Ehrlich RL; Palmer JN; Workman AD; Blasetti M; Sen B; Hammond J; Cohen NA; Ehrlich GD; Mell JC
Microbiome; 2018 Oct; 6(1):190. PubMed ID: 30352611
[TBL] [Abstract][Full Text] [Related]
8. Evaluation of 16S rRNA amplicon sequencing using two next-generation sequencing technologies for phylogenetic analysis of the rumen bacterial community in steers.
Myer PR; Kim M; Freetly HC; Smith TPL
J Microbiol Methods; 2016 Aug; 127():132-140. PubMed ID: 27282101
[TBL] [Abstract][Full Text] [Related]
9. RiboFR-Seq: a novel approach to linking 16S rRNA amplicon profiles to metagenomes.
Zhang Y; Ji P; Wang J; Zhao F
Nucleic Acids Res; 2016 Jun; 44(10):e99. PubMed ID: 26984526
[TBL] [Abstract][Full Text] [Related]
10. Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy.
Zhu Q; Huang S; Gonzalez A; McGrath I; McDonald D; Haiminen N; Armstrong G; Vázquez-Baeza Y; Yu J; Kuczynski J; Sepich-Poore GD; Swafford AD; Das P; Shaffer JP; Lejzerowicz F; Belda-Ferre P; Havulinna AS; Méric G; Niiranen T; Lahti L; Salomaa V; Kim HC; Jain M; Inouye M; Gilbert JA; Knight R
mSystems; 2022 Apr; 7(2):e0016722. PubMed ID: 35369727
[TBL] [Abstract][Full Text] [Related]
11. Absolute quantitation of microbes using 16S rRNA gene metabarcoding: A rapid normalization of relative abundances by quantitative PCR targeting a 16S rRNA gene spike-in standard.
Zemb O; Achard CS; Hamelin J; De Almeida ML; Gabinaud B; Cauquil L; Verschuren LMG; Godon JJ
Microbiologyopen; 2020 Mar; 9(3):e977. PubMed ID: 31927795
[TBL] [Abstract][Full Text] [Related]
12. Different next generation sequencing platforms produce different microbial profiles and diversity in cystic fibrosis sputum.
Hahn A; Sanyal A; Perez GF; Colberg-Poley AM; Campos J; Rose MC; Pérez-Losada M
J Microbiol Methods; 2016 Nov; 130():95-99. PubMed ID: 27609714
[TBL] [Abstract][Full Text] [Related]
13. Cilantro microbiome before and after nonselective pre-enrichment for Salmonella using 16S rRNA and metagenomic sequencing.
Jarvis KG; White JR; Grim CJ; Ewing L; Ottesen AR; Beaubrun JJ; Pettengill JB; Brown E; Hanes DE
BMC Microbiol; 2015 Aug; 15():160. PubMed ID: 26264042
[TBL] [Abstract][Full Text] [Related]
14. Comprehensive Assessment of 16S rRNA Gene Amplicon Sequencing for Microbiome Profiling across Multiple Habitats.
Zhang W; Fan X; Shi H; Li J; Zhang M; Zhao J; Su X
Microbiol Spectr; 2023 Jun; 11(3):e0056323. PubMed ID: 37102867
[TBL] [Abstract][Full Text] [Related]
15. Evaluation of PacBio sequencing for full-length bacterial 16S rRNA gene classification.
Wagner J; Coupland P; Browne HP; Lawley TD; Francis SC; Parkhill J
BMC Microbiol; 2016 Nov; 16(1):274. PubMed ID: 27842515
[TBL] [Abstract][Full Text] [Related]
16. Long-read based de novo assembly of low-complexity metagenome samples results in finished genomes and reveals insights into strain diversity and an active phage system.
Somerville V; Lutz S; Schmid M; Frei D; Moser A; Irmler S; Frey JE; Ahrens CH
BMC Microbiol; 2019 Jun; 19(1):143. PubMed ID: 31238873
[TBL] [Abstract][Full Text] [Related]
17. Comparison of Illumina versus Nanopore 16S rRNA Gene Sequencing of the Human Nasal Microbiota.
Heikema AP; Horst-Kreft D; Boers SA; Jansen R; Hiltemann SD; de Koning W; Kraaij R; de Ridder MAJ; van Houten CB; Bont LJ; Stubbs AP; Hays JP
Genes (Basel); 2020 Sep; 11(9):. PubMed ID: 32967250
[TBL] [Abstract][Full Text] [Related]
18. High-resolution microbiome analysis enabled by linking of 16S rRNA gene sequences with adjacent genomic contexts.
Kapustina Ž; Medžiūnė J; Alzbutas G; Rokaitis I; Matjošaitis K; Mackevičius G; Žeimytė S; Karpus L; Lubys A
Microb Genom; 2021 Sep; 7(9):. PubMed ID: 34473015
[TBL] [Abstract][Full Text] [Related]
19. A comparison between full-length 16S rRNA Oxford nanopore sequencing and Illumina V3-V4 16S rRNA sequencing in head and neck cancer tissues.
Yeo K; Connell J; Bouras G; Smith E; Murphy W; Hodge JC; Krishnan S; Wormald PJ; Valentine R; Psaltis AJ; Vreugde S; Fenix KA
Arch Microbiol; 2024 May; 206(6):248. PubMed ID: 38713383
[TBL] [Abstract][Full Text] [Related]
20. Shotgun Metagenomics of Gastric Biopsies Reveals Compositional and Functional Microbiome Shifts in High- and Low-Gastric-Cancer-Risk Populations from Colombia, South America.
Mannion A; Sheh A; Shen Z; Dzink-Fox J; Piazuelo MB; Wilson KT; Peek R; Fox JG
Gut Microbes; 2023; 15(1):2186677. PubMed ID: 36907988
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
