204 related articles for article (PubMed ID: 35850048)
21. GateKeeper: a new hardware architecture for accelerating pre-alignment in DNA short read mapping.
Alser M; Hassan H; Xin H; Ergin O; Mutlu O; Alkan C
Bioinformatics; 2017 Nov; 33(21):3355-3363. PubMed ID: 28575161
[TBL] [Abstract][Full Text] [Related]
22. Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.
Wick RR; Judd LM; Gorrie CL; Holt KE
PLoS Comput Biol; 2017 Jun; 13(6):e1005595. PubMed ID: 28594827
[TBL] [Abstract][Full Text] [Related]
23. Accelerating the Next Generation Long Read Mapping with the FPGA-Based System.
Chen P; Wang C; Li X; Zhou X
IEEE/ACM Trans Comput Biol Bioinform; 2014; 11(5):840-52. PubMed ID: 26356857
[TBL] [Abstract][Full Text] [Related]
24. Fec: a fast error correction method based on two-rounds overlapping and caching.
Zhang J; Nie F; Huang N; Ni P; Luo F; Wang J
Bioinformatics; 2022 Sep; 38(19):4629-4632. PubMed ID: 35977383
[TBL] [Abstract][Full Text] [Related]
25. CAREx: context-aware read extension of paired-end sequencing data.
Kallenborn F; Schmidt B
BMC Bioinformatics; 2024 May; 25(1):186. PubMed ID: 38730374
[TBL] [Abstract][Full Text] [Related]
26. Apollo: a sequencing-technology-independent, scalable and accurate assembly polishing algorithm.
Firtina C; Kim JS; Alser M; Senol Cali D; Cicek AE; Alkan C; Mutlu O
Bioinformatics; 2020 Jun; 36(12):3669-3679. PubMed ID: 32167530
[TBL] [Abstract][Full Text] [Related]
27. Scalable long read self-correction and assembly polishing with multiple sequence alignment.
Morisse P; Marchet C; Limasset A; Lecroq T; Lefebvre A
Sci Rep; 2021 Jan; 11(1):761. PubMed ID: 33436980
[TBL] [Abstract][Full Text] [Related]
28. lordFAST: sensitive and Fast Alignment Search Tool for LOng noisy Read sequencing Data.
Haghshenas E; Sahinalp SC; Hach F
Bioinformatics; 2019 Jan; 35(1):20-27. PubMed ID: 30561550
[TBL] [Abstract][Full Text] [Related]
29. Arioc: GPU-accelerated alignment of short bisulfite-treated reads.
Wilton R; Li X; Feinberg AP; Szalay AS
Bioinformatics; 2018 Aug; 34(15):2673-2675. PubMed ID: 29554207
[TBL] [Abstract][Full Text] [Related]
30. BiSpark: a Spark-based highly scalable aligner for bisulfite sequencing data.
Soe S; Park Y; Chae H
BMC Bioinformatics; 2018 Dec; 19(1):472. PubMed ID: 30526492
[TBL] [Abstract][Full Text] [Related]
31. Fast read alignment with incorporation of known genomic variants.
Guo H; Liu B; Guan D; Fu Y; Wang Y
BMC Med Inform Decis Mak; 2019 Dec; 19(Suppl 6):265. PubMed ID: 31856811
[TBL] [Abstract][Full Text] [Related]
32. A Sequence-Based Novel Approach for Quality Evaluation of Third-Generation Sequencing Reads.
Zhang W; Huang N; Zheng J; Liao X; Wang J; Li HD
Genes (Basel); 2019 Jan; 10(1):. PubMed ID: 30646604
[TBL] [Abstract][Full Text] [Related]
33. Parallel and Scalable Short-Read Alignment on Multi-Core Clusters Using UPC+.
González-Domínguez J; Liu Y; Schmidt B
PLoS One; 2016; 11(1):e0145490. PubMed ID: 26731399
[TBL] [Abstract][Full Text] [Related]
34. Long Read Alignment with Parallel MapReduce Cloud Platform.
Al-Absi AA; Kang DK
Biomed Res Int; 2015; 2015():807407. PubMed ID: 26839887
[TBL] [Abstract][Full Text] [Related]
35. Fast and memory efficient approach for mapping NGS reads to a reference genome.
Kumar S; Agarwal S; Ranvijay
J Bioinform Comput Biol; 2019 Apr; 17(2):1950008. PubMed ID: 31057068
[TBL] [Abstract][Full Text] [Related]
36. Efficient end-to-end long-read sequence mapping using minimap2-fpga integrated with hardware accelerated chaining.
Liyanage K; Samarakoon H; Parameswaran S; Gamaarachchi H
Sci Rep; 2023 Nov; 13(1):20174. PubMed ID: 37978244
[TBL] [Abstract][Full Text] [Related]
37. Evaluation of tools for long read RNA-seq splice-aware alignment.
Križanovic K; Echchiki A; Roux J; Šikic M
Bioinformatics; 2018 Mar; 34(5):748-754. PubMed ID: 29069314
[TBL] [Abstract][Full Text] [Related]
38. Acceleration of short and long DNA read mapping without loss of accuracy using suffix array.
Tárraga J; Arnau V; Martínez H; Moreno R; Cazorla D; Salavert-Torres J; Blanquer-Espert I; Dopazo J; Medina I
Bioinformatics; 2014 Dec; 30(23):3396-8. PubMed ID: 25143289
[TBL] [Abstract][Full Text] [Related]
39. Long read alignment based on maximal exact match seeds.
Liu Y; Schmidt B
Bioinformatics; 2012 Sep; 28(18):i318-i324. PubMed ID: 22962447
[TBL] [Abstract][Full Text] [Related]
40. DCHap: A Divide-and-Conquer Haplotype Phasing Algorithm for Third-Generation Sequences.
Li Y; Lin Y
IEEE/ACM Trans Comput Biol Bioinform; 2022; 19(3):1277-1284. PubMed ID: 32750878
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
