These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

124 related articles for article (PubMed ID: 35858747)

  • 1. Identifying cell state-associated alternative splicing events and their coregulation.
    Buen Abad Najar CF; Burra P; Yosef N; Lareau LF
    Genome Res; 2022 Jul; 32(7):1385-1397. PubMed ID: 35858747
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Detecting differential alternative splicing events in scRNA-seq with or without Unique Molecular Identifiers.
    Hu Y; Wang K; Li M
    PLoS Comput Biol; 2020 Jun; 16(6):e1007925. PubMed ID: 32502143
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Coverage-dependent bias creates the appearance of binary splicing in single cells.
    Buen Abad Najar CF; Yosef N; Lareau LF
    Elife; 2020 Jun; 9():. PubMed ID: 32597758
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Universal Alternative Splicing of Noncoding Exons.
    Deveson IW; Brunck ME; Blackburn J; Tseng E; Hon T; Clark TA; Clark MB; Crawford J; Dinger ME; Nielsen LK; Mattick JS; Mercer TR
    Cell Syst; 2018 Feb; 6(2):245-255.e5. PubMed ID: 29396323
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Mining alternative splicing patterns in scRNA-seq data using scASfind.
    Song Y; Parada G; Lee JTH; Hemberg M
    Genome Biol; 2024 Jul; 25(1):197. PubMed ID: 39075577
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Identification of KLF6/PSGs and NPY-Related USF2/CEACAM Transcriptional Regulatory Networks via Spinal Cord Bulk and Single-Cell RNA-Seq Analysis.
    Liu X; Gao W; Liu W
    Dis Markers; 2021; 2021():2826609. PubMed ID: 34880956
    [TBL] [Abstract][Full Text] [Related]  

  • 7. BRIE: transcriptome-wide splicing quantification in single cells.
    Huang Y; Sanguinetti G
    Genome Biol; 2017 Jun; 18(1):123. PubMed ID: 28655331
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Single-cell RNA-seq data analysis reveals functionally relevant biomarkers of early brain development and their regulatory footprints in human embryonic stem cells (hESCs).
    Alamin M; Humaira Sultana M; Babarinde IA; Azad AKM; Moni MA; Xu H
    Brief Bioinform; 2024 Mar; 25(3):. PubMed ID: 38739758
    [TBL] [Abstract][Full Text] [Related]  

  • 9. AS-Quant: Detection and Visualization of Alternative Splicing Events with RNA-seq Data.
    Fahmi NA; Nassereddeen H; Chang J; Park M; Yeh H; Sun J; Fan D; Yong J; Zhang W
    Int J Mol Sci; 2021 Apr; 22(9):. PubMed ID: 33922891
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Inference of differentiation time for single cell transcriptomes using cell population reference data.
    Sun N; Yu X; Li F; Liu D; Suo S; Chen W; Chen S; Song L; Green CD; McDermott J; Shen Q; Jing N; Han JJ
    Nat Commun; 2017 Nov; 8(1):1856. PubMed ID: 29187729
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Identifying strengths and weaknesses of methods for computational network inference from single-cell RNA-seq data.
    McCalla SG; Fotuhi Siahpirani A; Li J; Pyne S; Stone M; Periyasamy V; Shin J; Roy S
    G3 (Bethesda); 2023 Mar; 13(3):. PubMed ID: 36626328
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Using BRIE to Detect and Analyze Splicing Isoforms in scRNA-Seq Data.
    Huang Y; Sanguinetti G
    Methods Mol Biol; 2019; 1935():175-185. PubMed ID: 30758827
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Integrative deep models for alternative splicing.
    Jha A; Gazzara MR; Barash Y
    Bioinformatics; 2017 Jul; 33(14):i274-i282. PubMed ID: 28882000
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Alternative Splicing Signatures in RNA-seq Data: Percent Spliced in (PSI).
    Schafer S; Miao K; Benson CC; Heinig M; Cook SA; Hubner N
    Curr Protoc Hum Genet; 2015 Oct; 87():11.16.1-11.16.14. PubMed ID: 26439713
    [TBL] [Abstract][Full Text] [Related]  

  • 15. SplicingCompass: differential splicing detection using RNA-seq data.
    Aschoff M; Hotz-Wagenblatt A; Glatting KH; Fischer M; Eils R; König R
    Bioinformatics; 2013 May; 29(9):1141-8. PubMed ID: 23449093
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Integrating many co-splicing networks to reconstruct splicing regulatory modules.
    Dai C; Li W; Liu J; Zhou XJ
    BMC Syst Biol; 2012; 6 Suppl 1(Suppl 1):S17. PubMed ID: 23046974
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Genome-wide association between DNA methylation and alternative splicing in an invertebrate.
    Flores K; Wolschin F; Corneveaux JJ; Allen AN; Huentelman MJ; Amdam GV
    BMC Genomics; 2012 Sep; 13():480. PubMed ID: 22978521
    [TBL] [Abstract][Full Text] [Related]  

  • 18. MkcDBGAS: a reference-free approach to identify comprehensive alternative splicing events in a transcriptome.
    Zhang Q; Cao L; Song H; Lin K; Pang E
    Brief Bioinform; 2023 Sep; 24(6):. PubMed ID: 37833843
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Full-length transcript sequencing of human and mouse cerebral cortex identifies widespread isoform diversity and alternative splicing.
    Leung SK; Jeffries AR; Castanho I; Jordan BT; Moore K; Davies JP; Dempster EL; Bray NJ; O'Neill P; Tseng E; Ahmed Z; Collier DA; Jeffery ED; Prabhakar S; Schalkwyk L; Jops C; Gandal MJ; Sheynkman GM; Hannon E; Mill J
    Cell Rep; 2021 Nov; 37(7):110022. PubMed ID: 34788620
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Systematic discovery of regulated and conserved alternative exons in the mammalian brain reveals NMD modulating chromatin regulators.
    Yan Q; Weyn-Vanhentenryck SM; Wu J; Sloan SA; Zhang Y; Chen K; Wu JQ; Barres BA; Zhang C
    Proc Natl Acad Sci U S A; 2015 Mar; 112(11):3445-50. PubMed ID: 25737549
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.