134 related articles for article (PubMed ID: 35862176)
1. Bioinformatic Analysis to Investigate Metaproteome Composition Using Trans-Proteomic Pipeline.
He S; Ranganathan S
Curr Protoc; 2022 Jul; 2(7):e506. PubMed ID: 35862176
[TBL] [Abstract][Full Text] [Related]
2. Metaproteomic Analysis of an Oral Squamous Cell Carcinoma Dataset Suggests Diagnostic Potential of the Mycobiome.
He S; Chakraborty R; Ranganathan S
Int J Mol Sci; 2023 Jan; 24(2):. PubMed ID: 36674563
[TBL] [Abstract][Full Text] [Related]
3. Trans-Proteomic Pipeline, a standardized data processing pipeline for large-scale reproducible proteomics informatics.
Deutsch EW; Mendoza L; Shteynberg D; Slagel J; Sun Z; Moritz RL
Proteomics Clin Appl; 2015 Aug; 9(7-8):745-54. PubMed ID: 25631240
[TBL] [Abstract][Full Text] [Related]
4. A guided tour of the Trans-Proteomic Pipeline.
Deutsch EW; Mendoza L; Shteynberg D; Farrah T; Lam H; Tasman N; Sun Z; Nilsson E; Pratt B; Prazen B; Eng JK; Martin DB; Nesvizhskii AI; Aebersold R
Proteomics; 2010 Mar; 10(6):1150-9. PubMed ID: 20101611
[TBL] [Abstract][Full Text] [Related]
5. Trans-Proteomic Pipeline: Robust Mass Spectrometry-Based Proteomics Data Analysis Suite.
Deutsch EW; Mendoza L; Shteynberg DD; Hoopmann MR; Sun Z; Eng JK; Moritz RL
J Proteome Res; 2023 Feb; 22(2):615-624. PubMed ID: 36648445
[TBL] [Abstract][Full Text] [Related]
6. Label-free plasma proteomics for the identification of the putative biomarkers of oral squamous cell carcinoma.
Gautam SS; Singh RP; Karsauliya K; Sonker AK; Reddy PJ; Mehrotra D; Gupta S; Singh S; Kumar R; Singh SP
J Proteomics; 2022 May; 259():104541. PubMed ID: 35231661
[TBL] [Abstract][Full Text] [Related]
7. A straightforward and efficient analytical pipeline for metaproteome characterization.
Tanca A; Palomba A; Pisanu S; Deligios M; Fraumene C; Manghina V; Pagnozzi D; Addis MF; Uzzau S
Microbiome; 2014; 2(1):49. PubMed ID: 25516796
[TBL] [Abstract][Full Text] [Related]
8. WinProphet: A User-Friendly Pipeline Management System for Proteomics Data Analysis Based on Trans-Proteomic Pipeline.
Chen CT; Ko CL; Choong WK; Wang JH; Hsu WL; Sung TY
Anal Chem; 2019 Aug; 91(15):9403-9406. PubMed ID: 31305071
[TBL] [Abstract][Full Text] [Related]
9. Bioinformatic Workflows for Metaproteomics.
Holstein T; Muth T
Methods Mol Biol; 2024; 2820():187-213. PubMed ID: 38941024
[TBL] [Abstract][Full Text] [Related]
10. Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics.
Brusniak MY; Bodenmiller B; Campbell D; Cooke K; Eddes J; Garbutt A; Lau H; Letarte S; Mueller LN; Sharma V; Vitek O; Zhang N; Aebersold R; Watts JD
BMC Bioinformatics; 2008 Dec; 9():542. PubMed ID: 19087345
[TBL] [Abstract][Full Text] [Related]
11. Generating Sample-Specific Databases for Mass Spectrometry-Based Proteomic Analysis by Using RNA Sequencing.
Luge T; Sauer S
Methods Mol Biol; 2016; 1394():219-232. PubMed ID: 26700052
[TBL] [Abstract][Full Text] [Related]
12. Metaproteomics: extracting and mining proteome information to characterize metabolic activities in microbial communities.
Abraham PE; Giannone RJ; Xiong W; Hettich RL
Curr Protoc Bioinformatics; 2014 Jun; 46():13.26.1-13.26.14. PubMed ID: 24939130
[TBL] [Abstract][Full Text] [Related]
13. Metaproteomic data of maize rhizosphere for deciphering functional diversity.
Renu ; Gupta SK; Rai AK; Sarim KM; Sharma A; Budhlakoti N; Arora D; Verma DK; Singh DP
Data Brief; 2019 Dec; 27():104574. PubMed ID: 31692741
[TBL] [Abstract][Full Text] [Related]
14. Bottom-Up Community Proteome Analysis of Saliva Samples and Tongue Swabs by Data-Dependent Acquisition Nano LC-MS/MS Mass Spectrometry.
Rabe A; Gesell Salazar M; Völker U
Methods Mol Biol; 2021; 2327():221-238. PubMed ID: 34410648
[TBL] [Abstract][Full Text] [Related]
15. Computational Pipeline for Analysis of Biomedical Networks with BioNAR.
McLean C; Sorokin A; Armstrong JD; Sorokina O
Curr Protoc; 2023 Dec; 3(12):e940. PubMed ID: 38050642
[TBL] [Abstract][Full Text] [Related]
16. Bioinformatic progress and applications in metaproteogenomics for bridging the gap between genomic sequences and metabolic functions in microbial communities.
Seifert J; Herbst FA; Halkjaer Nielsen P; Planes FJ; Jehmlich N; Ferrer M; von Bergen M
Proteomics; 2013 Oct; 13(18-19):2786-804. PubMed ID: 23625762
[TBL] [Abstract][Full Text] [Related]
17. Software pipeline and data analysis for MS/MS proteomics: the trans-proteomic pipeline.
Keller A; Shteynberg D
Methods Mol Biol; 2011; 694():169-89. PubMed ID: 21082435
[TBL] [Abstract][Full Text] [Related]
18. Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows.
Van Den Bossche T; Kunath BJ; Schallert K; Schäpe SS; Abraham PE; Armengaud J; Arntzen MØ; Bassignani A; Benndorf D; Fuchs S; Giannone RJ; Griffin TJ; Hagen LH; Halder R; Henry C; Hettich RL; Heyer R; Jagtap P; Jehmlich N; Jensen M; Juste C; Kleiner M; Langella O; Lehmann T; Leith E; May P; Mesuere B; Miotello G; Peters SL; Pible O; Queiros PT; Reichl U; Renard BY; Schiebenhoefer H; Sczyrba A; Tanca A; Trappe K; Trezzi JP; Uzzau S; Verschaffelt P; von Bergen M; Wilmes P; Wolf M; Martens L; Muth T
Nat Commun; 2021 Dec; 12(1):7305. PubMed ID: 34911965
[TBL] [Abstract][Full Text] [Related]
19. Metaproteomic data analysis at a glance: advances in computational microbial community proteomics.
Muth T; Renard BY; Martens L
Expert Rev Proteomics; 2016 Aug; 13(8):757-69. PubMed ID: 27376173
[TBL] [Abstract][Full Text] [Related]
20. MetaLab: an automated pipeline for metaproteomic data analysis.
Cheng K; Ning Z; Zhang X; Li L; Liao B; Mayne J; Stintzi A; Figeys D
Microbiome; 2017 Dec; 5(1):157. PubMed ID: 29197424
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
