139 related articles for article (PubMed ID: 35865114)
1. A Highly Sensitive Method to Efficiently Profile the Histone Modifications of FFPE Samples.
Zhao L; Polavarapu VK; Yadav RP; Xing P; Chen X
Bio Protoc; 2022 May; 12(10):. PubMed ID: 35865114
[TBL] [Abstract][Full Text] [Related]
2. FACT-seq: profiling histone modifications in formalin-fixed paraffin-embedded samples with low cell numbers.
Zhao L; Xing P; Polavarapu VK; Zhao M; Valero-Martínez B; Dang Y; Maturi N; Mathot L; Neves I; Yildirim I; Swartling FJ; Sjöblom T; Uhrbom L; Chen X
Nucleic Acids Res; 2021 Dec; 49(21):e125. PubMed ID: 34534335
[TBL] [Abstract][Full Text] [Related]
3. FFPE-ATAC: A Highly Sensitive Method for Profiling Chromatin Accessibility in Formalin-Fixed Paraffin-Embedded Samples.
Yadav RP; Polavarapu VK; Xing P; Chen X
Curr Protoc; 2022 Aug; 2(8):e535. PubMed ID: 35994571
[TBL] [Abstract][Full Text] [Related]
4. Profiling chromatin accessibility in formalin-fixed paraffin-embedded samples.
Zhang H; Polavarapu VK; Xing P; Zhao M; Mathot L; Zhao L; Rosen G; Swartling FJ; Sjöblom T; Chen X
Genome Res; 2022 Jan; 32(1):150-161. PubMed ID: 34261731
[TBL] [Abstract][Full Text] [Related]
5. FiTAc-seq: fixed-tissue ChIP-seq for H3K27ac profiling and super-enhancer analysis of FFPE tissues.
Font-Tello A; Kesten N; Xie Y; Taing L; Varešlija D; Young LS; Hamid AA; Van Allen EM; Sweeney CJ; Gjini E; Lako A; Hodi FS; Bellmunt J; Brown M; Cejas P; Long HW
Nat Protoc; 2020 Aug; 15(8):2503-2518. PubMed ID: 32591768
[TBL] [Abstract][Full Text] [Related]
6. Epigenomic profiling of archived FFPE tissues by enhanced PAT-ChIP (EPAT-ChIP) technology.
Amatori S; Persico G; Paolicelli C; Hillje R; Sahnane N; Corini F; Furlan D; Luzi L; Minucci S; Giorgio M; Pelicci PG; Fanelli M
Clin Epigenetics; 2018 Nov; 10(1):143. PubMed ID: 30446010
[TBL] [Abstract][Full Text] [Related]
7. Genome-Wide Chromatin Analysis of FFPE Tissues Using a Dual-Arm Robot with Clinical Potential.
Kaneko S; Mitsuyama T; Shiraishi K; Ikawa N; Shozu K; Dozen A; Machino H; Asada K; Komatsu M; Kukita A; Sone K; Yoshida H; Motoi N; Hayami S; Yoneoka Y; Kato T; Kohno T; Natsume T; Keudell GV; Saloura V; Yamaue H; Hamamoto R
Cancers (Basel); 2021 Apr; 13(9):. PubMed ID: 33924956
[TBL] [Abstract][Full Text] [Related]
8. PAT-ChIP coupled with laser microdissection allows the study of chromatin in selected cell populations from paraffin-embedded patient samples.
Amatori S; Ballarini M; Faversani A; Belloni E; Fusar F; Bosari S; Pelicci PG; Minucci S; Fanelli M
Epigenetics Chromatin; 2014; 7():18. PubMed ID: 25104973
[TBL] [Abstract][Full Text] [Related]
9. Mining the Archives: A Cross-Platform Analysis of Gene Expression Profiles in Archival Formalin-Fixed Paraffin-Embedded Tissues.
Webster AF; Zumbo P; Fostel J; Gandara J; Hester SD; Recio L; Williams A; Wood CE; Yauk CL; Mason CE
Toxicol Sci; 2015 Dec; 148(2):460-72. PubMed ID: 26361796
[TBL] [Abstract][Full Text] [Related]
10. Single-strand DNA library preparation improves sequencing of formalin-fixed and paraffin-embedded (FFPE) cancer DNA.
Stiller M; Sucker A; Griewank K; Aust D; Baretton GB; Schadendorf D; Horn S
Oncotarget; 2016 Sep; 7(37):59115-59128. PubMed ID: 27463017
[TBL] [Abstract][Full Text] [Related]
11. Whole-Transcriptome profiling of formalin-fixed, paraffin-embedded renal cell carcinoma by RNA-seq.
Li P; Conley A; Zhang H; Kim HL
BMC Genomics; 2014 Dec; 15(1):1087. PubMed ID: 25495041
[TBL] [Abstract][Full Text] [Related]
12. Identification and validation of differentially expressed transcripts by RNA-sequencing of formalin-fixed, paraffin-embedded (FFPE) lung tissue from patients with Idiopathic Pulmonary Fibrosis.
Vukmirovic M; Herazo-Maya JD; Blackmon J; Skodric-Trifunovic V; Jovanovic D; Pavlovic S; Stojsic J; Zeljkovic V; Yan X; Homer R; Stefanovic B; Kaminski N
BMC Pulm Med; 2017 Jan; 17(1):15. PubMed ID: 28081703
[TBL] [Abstract][Full Text] [Related]
13. Editor's Highlight: Dose-Response Analysis of RNA-Seq Profiles in Archival Formalin-Fixed Paraffin-Embedded Samples.
Hester SD; Bhat V; Chorley BN; Carswell G; Jones W; Wehmas LC; Wood CE
Toxicol Sci; 2016 Dec; 154(2):202-213. PubMed ID: 27562560
[TBL] [Abstract][Full Text] [Related]
14. Case study: Targeted RNA-sequencing of aged formalin-fixed paraffin-embedded samples for understanding chemical mode of action.
Cannizzo MD; Wood CE; Hester SD; Wehmas LC
Toxicol Rep; 2022; 9():883-894. PubMed ID: 36518475
[TBL] [Abstract][Full Text] [Related]
15. Next-generation sequencing of RNA and DNA isolated from paired fresh-frozen and formalin-fixed paraffin-embedded samples of human cancer and normal tissue.
Hedegaard J; Thorsen K; Lund MK; Hein AM; Hamilton-Dutoit SJ; Vang S; Nordentoft I; Birkenkamp-Demtröder K; Kruhøffer M; Hager H; Knudsen B; Andersen CL; Sørensen KD; Pedersen JS; Ørntoft TF; Dyrskjøt L
PLoS One; 2014; 9(5):e98187. PubMed ID: 24878701
[TBL] [Abstract][Full Text] [Related]
16. MultiomicsTracks96: A high throughput PIXUL-Matrix-based toolbox to profile frozen and FFPE tissues multiomes.
Mar D; Babenko IM; Zhang R; Noble WS; Denisenko O; Vaisar T; Bomsztyk K
bioRxiv; 2023 Mar; ():. PubMed ID: 36993219
[TBL] [Abstract][Full Text] [Related]
17. Application of the 3' mRNA-Seq using unique molecular identifiers in highly degraded RNA derived from formalin-fixed, paraffin-embedded tissue.
Jang JS; Holicky E; Lau J; McDonough S; Mutawe M; Koster MJ; Warrington KJ; Cuninngham JM
BMC Genomics; 2021 Oct; 22(1):759. PubMed ID: 34689749
[TBL] [Abstract][Full Text] [Related]
18. mRNA-seq whole transcriptome profiling of fresh frozen versus archived fixed tissues.
Bossel Ben-Moshe N; Gilad S; Perry G; Benjamin S; Balint-Lahat N; Pavlovsky A; Halperin S; Markus B; Yosepovich A; Barshack I; Gal-Yam EN; Domany E; Kaufman B; Dadiani M
BMC Genomics; 2018 May; 19(1):419. PubMed ID: 29848287
[TBL] [Abstract][Full Text] [Related]
19. Transcriptome profiling of archived sectioned formalin-fixed paraffin-embedded (AS-FFPE) tissue for disease classification.
Kojima K; April C; Canasto-Chibuque C; Chen X; Deshmukh M; Venkatesh A; Tan PS; Kobayashi M; Kumada H; Fan JB; Hoshida Y
PLoS One; 2014; 9(1):e86961. PubMed ID: 24498002
[TBL] [Abstract][Full Text] [Related]
20. RNA extraction for RNA sequencing of archival renal tissues.
Landolt L; Marti HP; Beisland C; Flatberg A; Eikrem OS
Scand J Clin Lab Invest; 2016 Sep; 76(5):426-34. PubMed ID: 27173776
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]