These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

171 related articles for article (PubMed ID: 35879651)

  • 1. Integrated structure-based protein interface prediction.
    Walder M; Edelstein E; Carroll M; Lazarev S; Fajardo JE; Fiser A; Viswanathan R
    BMC Bioinformatics; 2022 Jul; 23(1):301. PubMed ID: 35879651
    [TBL] [Abstract][Full Text] [Related]  

  • 2. DNABind: a hybrid algorithm for structure-based prediction of DNA-binding residues by combining machine learning- and template-based approaches.
    Liu R; Hu J
    Proteins; 2013 Nov; 81(11):1885-99. PubMed ID: 23737141
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Ab initio and template-based prediction of multi-class distance maps by two-dimensional recursive neural networks.
    Walsh I; Baù D; Martin AJ; Mooney C; Vullo A; Pollastri G
    BMC Struct Biol; 2009 Jan; 9():5. PubMed ID: 19183478
    [TBL] [Abstract][Full Text] [Related]  

  • 4. RBRDetector: improved prediction of binding residues on RNA-binding protein structures using complementary feature- and template-based strategies.
    Yang XX; Deng ZL; Liu R
    Proteins; 2014 Oct; 82(10):2455-71. PubMed ID: 24854765
    [TBL] [Abstract][Full Text] [Related]  

  • 5. PCI-SS: MISO dynamic nonlinear protein secondary structure prediction.
    Green JR; Korenberg MJ; Aboul-Magd MO
    BMC Bioinformatics; 2009 Jul; 10():222. PubMed ID: 19615046
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Protein-RNA interface residue prediction using machine learning: an assessment of the state of the art.
    Walia RR; Caragea C; Lewis BA; Towfic F; Terribilini M; El-Manzalawy Y; Dobbs D; Honavar V
    BMC Bioinformatics; 2012 May; 13():89. PubMed ID: 22574904
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Prediction of protein-protein interaction sites from weakly homologous template structures using meta-threading and machine learning.
    Maheshwari S; Brylinski M
    J Mol Recognit; 2015 Jan; 28(1):35-48. PubMed ID: 26268369
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A hybrid method for protein-protein interface prediction.
    Hwang H; Petrey D; Honig B
    Protein Sci; 2016 Jan; 25(1):159-65. PubMed ID: 26178156
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Template-based prediction of protein structure with deep learning.
    Zhang H; Shen Y
    BMC Genomics; 2020 Dec; 21(Suppl 11):878. PubMed ID: 33372607
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Ensemble of Template-Free and Template-Based Classifiers for Protein Secondary Structure Prediction.
    de Oliveira GB; Pedrini H; Dias Z
    Int J Mol Sci; 2021 Oct; 22(21):. PubMed ID: 34768880
    [TBL] [Abstract][Full Text] [Related]  

  • 11. APIS: accurate prediction of hot spots in protein interfaces by combining protrusion index with solvent accessibility.
    Xia JF; Zhao XM; Song J; Huang DS
    BMC Bioinformatics; 2010 Apr; 11():174. PubMed ID: 20377884
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Predicting protein-protein interface residues using local surface structural similarity.
    Jordan RA; El-Manzalawy Y; Dobbs D; Honavar V
    BMC Bioinformatics; 2012 Mar; 13():41. PubMed ID: 22424103
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Global and local structural similarity in protein-protein complexes: implications for template-based docking.
    Kundrotas PJ; Vakser IA
    Proteins; 2013 Dec; 81(12):2137-42. PubMed ID: 23946125
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Ab initio and homology based prediction of protein domains by recursive neural networks.
    Walsh I; Martin AJ; Mooney C; Rubagotti E; Vullo A; Pollastri G
    BMC Bioinformatics; 2009 Jun; 10():195. PubMed ID: 19558651
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Predicting protein ligand binding sites by combining evolutionary sequence conservation and 3D structure.
    Capra JA; Laskowski RA; Thornton JM; Singh M; Funkhouser TA
    PLoS Comput Biol; 2009 Dec; 5(12):e1000585. PubMed ID: 19997483
    [TBL] [Abstract][Full Text] [Related]  

  • 16. DStruBTarget: Integrating Binding Affinity with Structure Similarity for Ligand-Binding Protein Prediction.
    Fan C; Wong PP; Zhao H
    J Chem Inf Model; 2020 Jan; 60(1):400-409. PubMed ID: 31833767
    [No Abstract]   [Full Text] [Related]  

  • 17. Protein-protein complex structure predictions by multimeric threading and template recombination.
    Mukherjee S; Zhang Y
    Structure; 2011 Jul; 19(7):955-66. PubMed ID: 21742262
    [TBL] [Abstract][Full Text] [Related]  

  • 18. HomPPI: a class of sequence homology based protein-protein interface prediction methods.
    Xue LC; Dobbs D; Honavar V
    BMC Bioinformatics; 2011 Jun; 12():244. PubMed ID: 21682895
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Characterization and prediction of protein interfaces to infer protein-protein interaction networks.
    Keskin O; Tuncbag N; Gursoy A
    Curr Pharm Biotechnol; 2008 Apr; 9(2):67-76. PubMed ID: 18393863
    [TBL] [Abstract][Full Text] [Related]  

  • 20. ProMate: a structure based prediction program to identify the location of protein-protein binding sites.
    Neuvirth H; Raz R; Schreiber G
    J Mol Biol; 2004 Apr; 338(1):181-99. PubMed ID: 15050833
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.