These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
153 related articles for article (PubMed ID: 35904542)
1. MIB2: metal ion-binding site prediction and modeling server. Lu CH; Chen CC; Yu CS; Liu YY; Liu JJ; Wei ST; Lin YF Bioinformatics; 2022 Sep; 38(18):4428-4429. PubMed ID: 35904542 [TBL] [Abstract][Full Text] [Related]
2. MIB: Metal Ion-Binding Site Prediction and Docking Server. Lin YF; Cheng CW; Shih CS; Hwang JK; Yu CS; Lu CH J Chem Inf Model; 2016 Dec; 56(12):2287-2291. PubMed ID: 27976886 [TBL] [Abstract][Full Text] [Related]
3. Recognizing metal and acid radical ion-binding sites by integrating ab initio modeling with template-based transferals. Hu X; Dong Q; Yang J; Zhang Y Bioinformatics; 2016 Nov; 32(21):3260-3269. PubMed ID: 27378301 [TBL] [Abstract][Full Text] [Related]
4. MIonSite: Ligand-specific prediction of metal ion-binding sites via enhanced AdaBoost algorithm with protein sequence information. Qiao L; Xie D Anal Biochem; 2019 Feb; 566():75-88. PubMed ID: 30414728 [TBL] [Abstract][Full Text] [Related]
5. PESDserv: a server for high-throughput comparison of protein binding site surfaces. Das S; Krein MP; Breneman CM Bioinformatics; 2010 Aug; 26(15):1913-4. PubMed ID: 20538727 [TBL] [Abstract][Full Text] [Related]
6. CheckMyMetal: a macromolecular metal-binding validation tool. Zheng H; Cooper DR; Porebski PJ; Shabalin IG; Handing KB; Minor W Acta Crystallogr D Struct Biol; 2017 Mar; 73(Pt 3):223-233. PubMed ID: 28291757 [TBL] [Abstract][Full Text] [Related]
7. GapRepairer: a server to model a structural gap and validate it using topological analysis. Jarmolinska AI; Kadlof M; Dabrowski-Tumanski P; Sulkowska JI Bioinformatics; 2018 Oct; 34(19):3300-3307. PubMed ID: 29718096 [TBL] [Abstract][Full Text] [Related]
8. mebipred: identifying metal-binding potential in protein sequence. Aptekmann AA; Buongiorno J; Giovannelli D; Glamoclija M; Ferreiro DU; Bromberg Y Bioinformatics; 2022 Jul; 38(14):3532-3540. PubMed ID: 35639953 [TBL] [Abstract][Full Text] [Related]
10. farPPI: a webserver for accurate prediction of protein-ligand binding structures for small-molecule PPI inhibitors by MM/PB(GB)SA methods. Wang Z; Wang X; Li Y; Lei T; Wang E; Li D; Kang Y; Zhu F; Hou T Bioinformatics; 2019 May; 35(10):1777-1779. PubMed ID: 30329012 [TBL] [Abstract][Full Text] [Related]
12. MDockPeP: An ab-initio protein-peptide docking server. Xu X; Yan C; Zou X J Comput Chem; 2018 Oct; 39(28):2409-2413. PubMed ID: 30368849 [TBL] [Abstract][Full Text] [Related]
13. 3D-partner: a web server to infer interacting partners and binding models. Chen YC; Lo YS; Hsu WC; Yang JM Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W561-7. PubMed ID: 17517763 [TBL] [Abstract][Full Text] [Related]
14. Vfold-Pipeline: a web server for RNA 3D structure prediction from sequences. Li J; Zhang S; Zhang D; Chen SJ Bioinformatics; 2022 Aug; 38(16):4042-4043. PubMed ID: 35758624 [TBL] [Abstract][Full Text] [Related]
16. PrankWeb 3: accelerated ligand-binding site predictions for experimental and modelled protein structures. Jakubec D; Skoda P; Krivak R; Novotny M; Hoksza D Nucleic Acids Res; 2022 Jul; 50(W1):W593-W597. PubMed ID: 35609995 [TBL] [Abstract][Full Text] [Related]
17. mFASD: a structure-based algorithm for discriminating different types of metal-binding sites. He W; Liang Z; Teng M; Niu L Bioinformatics; 2015 Jun; 31(12):1938-44. PubMed ID: 25649619 [TBL] [Abstract][Full Text] [Related]
18. Structure-based prediction of protein- peptide binding regions using Random Forest. Taherzadeh G; Zhou Y; Liew AW; Yang Y Bioinformatics; 2018 Feb; 34(3):477-484. PubMed ID: 29028926 [TBL] [Abstract][Full Text] [Related]
19. MCTBI: a web server for predicting metal ion effects in RNA structures. Sun LZ; Zhang JX; Chen SJ RNA; 2017 Aug; 23(8):1155-1165. PubMed ID: 28450533 [TBL] [Abstract][Full Text] [Related]
20. Protemot: prediction of protein binding sites with automatically extracted geometrical templates. Chang DT; Weng YZ; Lin JH; Hwang MJ; Oyang YJ Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W303-9. PubMed ID: 16845015 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]