132 related articles for article (PubMed ID: 35904569)
1. tmVar 3.0: an improved variant concept recognition and normalization tool.
Wei CH; Allot A; Riehle K; Milosavljevic A; Lu Z
Bioinformatics; 2022 Sep; 38(18):4449-4451. PubMed ID: 35904569
[TBL] [Abstract][Full Text] [Related]
2. tmVar 2.0: integrating genomic variant information from literature with dbSNP and ClinVar for precision medicine.
Wei CH; Phan L; Feltz J; Maiti R; Hefferon T; Lu Z
Bioinformatics; 2018 Jan; 34(1):80-87. PubMed ID: 28968638
[TBL] [Abstract][Full Text] [Related]
3. tmVar: a text mining approach for extracting sequence variants in biomedical literature.
Wei CH; Harris BR; Kao HY; Lu Z
Bioinformatics; 2013 Jun; 29(11):1433-9. PubMed ID: 23564842
[TBL] [Abstract][Full Text] [Related]
4. Beyond accuracy: creating interoperable and scalable text-mining web services.
Wei CH; Leaman R; Lu Z
Bioinformatics; 2016 Jun; 32(12):1907-10. PubMed ID: 26883486
[TBL] [Abstract][Full Text] [Related]
5. NCBI disease corpus: a resource for disease name recognition and concept normalization.
Doğan RI; Leaman R; Lu Z
J Biomed Inform; 2014 Feb; 47():1-10. PubMed ID: 24393765
[TBL] [Abstract][Full Text] [Related]
6. GNorm2: an improved gene name recognition and normalization system.
Wei CH; Luo L; Islamaj R; Lai PT; Lu Z
Bioinformatics; 2023 Oct; 39(10):. PubMed ID: 37878810
[TBL] [Abstract][Full Text] [Related]
7. nala: text mining natural language mutation mentions.
Cejuela JM; Bojchevski A; Uhlig C; Bekmukhametov R; Kumar Karn S; Mahmuti S; Baghudana A; Dubey A; Satagopam VP; Rost B
Bioinformatics; 2017 Jun; 33(12):1852-1858. PubMed ID: 28200120
[TBL] [Abstract][Full Text] [Related]
8. BioConceptVec: Creating and evaluating literature-based biomedical concept embeddings on a large scale.
Chen Q; Lee K; Yan S; Kim S; Wei CH; Lu Z
PLoS Comput Biol; 2020 Apr; 16(4):e1007617. PubMed ID: 32324731
[TBL] [Abstract][Full Text] [Related]
9. Large-scale event extraction from literature with multi-level gene normalization.
Van Landeghem S; Björne J; Wei CH; Hakala K; Pyysalo S; Ananiadou S; Kao HY; Lu Z; Salakoski T; Van de Peer Y; Ginter F
PLoS One; 2013; 8(4):e55814. PubMed ID: 23613707
[TBL] [Abstract][Full Text] [Related]
10. Recent advances of automated methods for searching and extracting genomic variant information from biomedical literature.
Lee K; Wei CH; Lu Z
Brief Bioinform; 2021 May; 22(3):. PubMed ID: 32770181
[TBL] [Abstract][Full Text] [Related]
11. tmBioC: improving interoperability of text-mining tools with BioC.
Khare R; Wei CH; Mao Y; Leaman R; Lu Z
Database (Oxford); 2014; 2014():. PubMed ID: 25062914
[TBL] [Abstract][Full Text] [Related]
12. TaggerOne: joint named entity recognition and normalization with semi-Markov Models.
Leaman R; Lu Z
Bioinformatics; 2016 Sep; 32(18):2839-46. PubMed ID: 27283952
[TBL] [Abstract][Full Text] [Related]
13. OrganismTagger: detection, normalization and grounding of organism entities in biomedical documents.
Naderi N; Kappler T; Baker CJ; Witte R
Bioinformatics; 2011 Oct; 27(19):2721-9. PubMed ID: 21828087
[TBL] [Abstract][Full Text] [Related]
14. Biomedical named entity recognition and linking datasets: survey and our recent development.
Huang MS; Lai PT; Lin PY; You YT; Tsai RT; Hsu WL
Brief Bioinform; 2020 Dec; 21(6):2219-2238. PubMed ID: 32602538
[TBL] [Abstract][Full Text] [Related]
15. FamPlex: a resource for entity recognition and relationship resolution of human protein families and complexes in biomedical text mining.
Bachman JA; Gyori BM; Sorger PK
BMC Bioinformatics; 2018 Jun; 19(1):248. PubMed ID: 29954318
[TBL] [Abstract][Full Text] [Related]
16. LitVar: a semantic search engine for linking genomic variant data in PubMed and PMC.
Allot A; Peng Y; Wei CH; Lee K; Phan L; Lu Z
Nucleic Acids Res; 2018 Jul; 46(W1):W530-W536. PubMed ID: 29762787
[TBL] [Abstract][Full Text] [Related]
17. ezTag: tagging biomedical concepts via interactive learning.
Kwon D; Kim S; Wei CH; Leaman R; Lu Z
Nucleic Acids Res; 2018 Jul; 46(W1):W523-W529. PubMed ID: 29788413
[TBL] [Abstract][Full Text] [Related]
18. NLM-Gene, a richly annotated gold standard dataset for gene entities that addresses ambiguity and multi-species gene recognition.
Islamaj R; Wei CH; Cissel D; Miliaras N; Printseva O; Rodionov O; Sekiya K; Ward J; Lu Z
J Biomed Inform; 2021 Jun; 118():103779. PubMed ID: 33839304
[TBL] [Abstract][Full Text] [Related]
19. GNormPlus: An Integrative Approach for Tagging Genes, Gene Families, and Protein Domains.
Wei CH; Kao HY; Lu Z
Biomed Res Int; 2015; 2015():918710. PubMed ID: 26380306
[TBL] [Abstract][Full Text] [Related]
20. NLM-Chem-BC7: manually annotated full-text resources for chemical entity annotation and indexing in biomedical articles.
Islamaj R; Leaman R; Cissel D; Coss C; Denicola J; Fisher C; Guzman R; Kochar PG; Miliaras N; Punske Z; Sekiya K; Trinh D; Whitman D; Schmidt S; Lu Z
Database (Oxford); 2022 Dec; 2022():. PubMed ID: 36458799
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
