292 related articles for article (PubMed ID: 35904764)
1. Evaluating Illumina-, Nanopore-, and PacBio-based genome assembly strategies with the bald notothen, Trematomus borchgrevinki.
Rayamajhi N; Cheng CC; Catchen JM
G3 (Bethesda); 2022 Nov; 12(11):. PubMed ID: 35904764
[TBL] [Abstract][Full Text] [Related]
2. Improved assembly of noisy long reads by k-mer validation.
Carvalho AB; Dupim EG; Goldstein G
Genome Res; 2016 Dec; 26(12):1710-1720. PubMed ID: 27831497
[TBL] [Abstract][Full Text] [Related]
3. Assembly of chloroplast genomes with long- and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case.
Wang W; Schalamun M; Morales-Suarez A; Kainer D; Schwessinger B; Lanfear R
BMC Genomics; 2018 Dec; 19(1):977. PubMed ID: 30594129
[TBL] [Abstract][Full Text] [Related]
4. The long and short of it: benchmarking viromics using Illumina, Nanopore and PacBio sequencing technologies.
Cook R; Brown N; Rihtman B; Michniewski S; Redgwell T; Clokie M; Stekel DJ; Chen Y; Scanlan DJ; Hobman JL; Nelson A; Jones MA; Smith D; Millard A
Microb Genom; 2024 Feb; 10(2):. PubMed ID: 38376377
[TBL] [Abstract][Full Text] [Related]
5. Evaluating long-read de novo assembly tools for eukaryotic genomes: insights and considerations.
Cosma BM; Shirali Hossein Zade R; Jordan EN; van Lent P; Peng C; Pillay S; Abeel T
Gigascience; 2022 Dec; 12():. PubMed ID: 38000912
[TBL] [Abstract][Full Text] [Related]
6. Polishing the Oxford Nanopore long-read assemblies of bacterial pathogens with Illumina short reads to improve genomic analyses.
Chen Z; Erickson DL; Meng J
Genomics; 2021 May; 113(3):1366-1377. PubMed ID: 33716184
[TBL] [Abstract][Full Text] [Related]
7. Completion of draft bacterial genomes by long-read sequencing of synthetic genomic pools.
Derakhshani H; Bernier SP; Marko VA; Surette MG
BMC Genomics; 2020 Jul; 21(1):519. PubMed ID: 32727443
[TBL] [Abstract][Full Text] [Related]
8. Evaluation of strategies for the assembly of diverse bacterial genomes using MinION long-read sequencing.
Goldstein S; Beka L; Graf J; Klassen JL
BMC Genomics; 2019 Jan; 20(1):23. PubMed ID: 30626323
[TBL] [Abstract][Full Text] [Related]
9. Can we use it? On the utility of de novo and reference-based assembly of Nanopore data for plant plastome sequencing.
Scheunert A; Dorfner M; Lingl T; Oberprieler C
PLoS One; 2020; 15(3):e0226234. PubMed ID: 32208422
[TBL] [Abstract][Full Text] [Related]
10. Evaluating the accuracy of Listeria monocytogenes assemblies from quasimetagenomic samples using long and short reads.
Commichaux S; Javkar K; Ramachandran P; Nagarajan N; Bertrand D; Chen Y; Reed E; Gonzalez-Escalona N; Strain E; Rand H; Pop M; Ottesen A
BMC Genomics; 2021 May; 22(1):389. PubMed ID: 34039264
[TBL] [Abstract][Full Text] [Related]
11. Are we there yet? Benchmarking low-coverage nanopore long-read sequencing for the assembling of mitochondrial genomes using the vulnerable silky shark Carcharhinus falciformis.
Baeza JA; García-De León FJ
BMC Genomics; 2022 Apr; 23(1):320. PubMed ID: 35459089
[TBL] [Abstract][Full Text] [Related]
12. Comparison of the two up-to-date sequencing technologies for genome assembly: HiFi reads of Pacific Biosciences Sequel II system and ultralong reads of Oxford Nanopore.
Lang D; Zhang S; Ren P; Liang F; Sun Z; Meng G; Tan Y; Li X; Lai Q; Han L; Wang D; Hu F; Wang W; Liu S
Gigascience; 2020 Dec; 9(12):. PubMed ID: 33319909
[TBL] [Abstract][Full Text] [Related]
13. Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes.
De Maio N; Shaw LP; Hubbard A; George S; Sanderson ND; Swann J; Wick R; AbuOun M; Stubberfield E; Hoosdally SJ; Crook DW; Peto TEA; Sheppard AE; Bailey MJ; Read DS; Anjum MF; Walker AS; Stoesser N; On Behalf Of The Rehab Consortium
Microb Genom; 2019 Sep; 5(9):. PubMed ID: 31483244
[TBL] [Abstract][Full Text] [Related]
14. Benchmarking multi-platform sequencing technologies for human genome assembly.
Wang J; Veldsman WP; Fang X; Huang Y; Xie X; Lyu A; Zhang L
Brief Bioinform; 2023 Sep; 24(5):. PubMed ID: 37594299
[TBL] [Abstract][Full Text] [Related]
15. An evaluation of the PacBio RS platform for sequencing and de novo assembly of a chloroplast genome.
Ferrarini M; Moretto M; Ward JA; Šurbanovski N; Stevanović V; Giongo L; Viola R; Cavalieri D; Velasco R; Cestaro A; Sargent DJ
BMC Genomics; 2013 Oct; 14():670. PubMed ID: 24083400
[TBL] [Abstract][Full Text] [Related]
16. LongStitch: high-quality genome assembly correction and scaffolding using long reads.
Coombe L; Li JX; Lo T; Wong J; Nikolic V; Warren RL; Birol I
BMC Bioinformatics; 2021 Oct; 22(1):534. PubMed ID: 34717540
[TBL] [Abstract][Full Text] [Related]
17. A comprehensive investigation of metagenome assembly by linked-read sequencing.
Zhang L; Fang X; Liao H; Zhang Z; Zhou X; Han L; Chen Y; Qiu Q; Li SC
Microbiome; 2020 Nov; 8(1):156. PubMed ID: 33176883
[TBL] [Abstract][Full Text] [Related]
18. A hybrid and scalable error correction algorithm for indel and substitution errors of long reads.
Das AK; Goswami S; Lee K; Park SJ
BMC Genomics; 2019 Dec; 20(Suppl 11):948. PubMed ID: 31856721
[TBL] [Abstract][Full Text] [Related]
19. Assessing the benefits of using mate-pairs to resolve repeats in de novo short-read prokaryotic assemblies.
Wetzel J; Kingsford C; Pop M
BMC Bioinformatics; 2011 Apr; 12():95. PubMed ID: 21486487
[TBL] [Abstract][Full Text] [Related]
20. Genome assembly using Nanopore-guided long and error-free DNA reads.
Madoui MA; Engelen S; Cruaud C; Belser C; Bertrand L; Alberti A; Lemainque A; Wincker P; Aury JM
BMC Genomics; 2015 Apr; 16(1):327. PubMed ID: 25927464
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
