137 related articles for article (PubMed ID: 35915051)
1. HAlign 3: Fast Multiple Alignment of Ultra-Large Numbers of Similar DNA/RNA Sequences.
Tang F; Chao J; Wei Y; Yang F; Zhai Y; Xu L; Zou Q
Mol Biol Evol; 2022 Aug; 39(8):. PubMed ID: 35915051
[TBL] [Abstract][Full Text] [Related]
2. SaAlign: Multiple DNA/RNA sequence alignment and phylogenetic tree construction tool for ultra-large datasets and ultra-long sequences based on suffix array.
Wang Z; Tan J; Long Y; Liu Y; Lei W; Cai J; Yang Y; Liu Z
Comput Struct Biotechnol J; 2022; 20():1487-1493. PubMed ID: 35422971
[TBL] [Abstract][Full Text] [Related]
3. WMSA: a novel method for multiple sequence alignment of DNA sequences.
Wei Y; Zou Q; Tang F; Yu L
Bioinformatics; 2022 Nov; 38(22):5019-5025. PubMed ID: 36179076
[TBL] [Abstract][Full Text] [Related]
4. HAlign-II: efficient ultra-large multiple sequence alignment and phylogenetic tree reconstruction with distributed and parallel computing.
Wan S; Zou Q
Algorithms Mol Biol; 2017; 12():25. PubMed ID: 29026435
[TBL] [Abstract][Full Text] [Related]
5. WMSA 2: a multiple DNA/RNA sequence alignment tool implemented with accurate progressive mode and a fast win-win mode combining the center star and progressive strategies.
Chen J; Chao J; Liu H; Yang F; Zou Q; Tang F
Brief Bioinform; 2023 Jul; 24(4):. PubMed ID: 37200156
[TBL] [Abstract][Full Text] [Related]
6. CMSA: a heterogeneous CPU/GPU computing system for multiple similar RNA/DNA sequence alignment.
Chen X; Wang C; Tang S; Yu C; Zou Q
BMC Bioinformatics; 2017 Jun; 18(1):315. PubMed ID: 28646874
[TBL] [Abstract][Full Text] [Related]
7. HAlign: Fast multiple similar DNA/RNA sequence alignment based on the centre star strategy.
Zou Q; Hu Q; Guo M; Wang G
Bioinformatics; 2015 Aug; 31(15):2475-81. PubMed ID: 25812743
[TBL] [Abstract][Full Text] [Related]
8. SPARK-MSNA: Efficient algorithm on Apache Spark for aligning multiple similar DNA/RNA sequences with supervised learning.
Vineetha V; Biji CL; Nair AS
Sci Rep; 2019 Apr; 9(1):6631. PubMed ID: 31036850
[TBL] [Abstract][Full Text] [Related]
9. A novel fast multiple nucleotide sequence alignment method based on FM-index.
Liu H; Zou Q; Xu Y
Brief Bioinform; 2022 Jan; 23(1):. PubMed ID: 34893794
[TBL] [Abstract][Full Text] [Related]
10. Multiple Sequence Alignment Based on a Suffix Tree and Center-Star Strategy: A Linear Method for Multiple Nucleotide Sequence Alignment on Spark Parallel Framework.
Su W; Liao X; Lu Y; Zou Q; Peng S
J Comput Biol; 2017 Dec; 24(12):1230-1242. PubMed ID: 29116822
[TBL] [Abstract][Full Text] [Related]
11. Suffix tree searcher: exploration of common substrings in large DNA sequence sets.
Minkley D; Whitney MJ; Lin SH; Barsky MG; Kelly C; Upton C
BMC Res Notes; 2014 Jul; 7():466. PubMed ID: 25053142
[TBL] [Abstract][Full Text] [Related]
12. BpWrapper: BioPerl-based sequence and tree utilities for rapid prototyping of bioinformatics pipelines.
Hernández Y; Bernstein R; Pagan P; Vargas L; McCaig W; Ramrattan G; Akther S; Larracuente A; Di L; Vieira FG; Qiu WG
BMC Bioinformatics; 2018 Mar; 19(1):76. PubMed ID: 29499649
[TBL] [Abstract][Full Text] [Related]
13. FMAlign2: a novel fast multiple nucleotide sequence alignment method for ultralong datasets.
Zhang P; Liu H; Wei Y; Zhai Y; Tian Q; Zou Q
Bioinformatics; 2024 Jan; 40(1):. PubMed ID: 38200554
[TBL] [Abstract][Full Text] [Related]
14. ProPIP: a tool for progressive multiple sequence alignment with Poisson Indel Process.
Maiolo M; Gatti L; Frei D; Leidi T; Gil M; Anisimova M
BMC Bioinformatics; 2021 Oct; 22(1):518. PubMed ID: 34689750
[TBL] [Abstract][Full Text] [Related]
15. PhySpeTree: an automated pipeline for reconstructing phylogenetic species trees.
Fang Y; Liu C; Lin J; Li X; Alavian KN; Yang Y; Niu Y
BMC Evol Biol; 2019 Dec; 19(1):219. PubMed ID: 31791235
[TBL] [Abstract][Full Text] [Related]
16. TPMA: A two pointers meta-alignment tool to ensemble different multiple nucleic acid sequence alignments.
Zhai Y; Chao J; Wang Y; Zhang P; Tang F; Zou Q
PLoS Comput Biol; 2024 Apr; 20(4):e1011988. PubMed ID: 38557416
[TBL] [Abstract][Full Text] [Related]
17. CSA: an efficient algorithm to improve circular DNA multiple alignment.
Fernandes F; Pereira L; Freitas AT
BMC Bioinformatics; 2009 Jul; 10():230. PubMed ID: 19627599
[TBL] [Abstract][Full Text] [Related]
18. HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching.
Bi G; Mao Y; Xing Q; Cao M
Genomics; 2018 Jan; 110(1):18-22. PubMed ID: 28780378
[TBL] [Abstract][Full Text] [Related]
19. ViralMSA: massively scalable reference-guided multiple sequence alignment of viral genomes.
Moshiri N
Bioinformatics; 2021 May; 37(5):714-716. PubMed ID: 32814953
[TBL] [Abstract][Full Text] [Related]
20. An efficient algorithm for local sequence alignment.
Haque W; Aravind A; Reddy B
Annu Int Conf IEEE Eng Med Biol Soc; 2008; 2008():1367-72. PubMed ID: 19162922
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
