BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

159 related articles for article (PubMed ID: 35920776)

  • 1. Incorporation of transition to transversion ratio and nonsense mutations, improves the estimation of the number of synonymous and non-synonymous sites in codons.
    Aziz R; Sen P; Beura PK; Das S; Tula D; Dash M; Namsa ND; Deka RC; Feil EJ; Satapathy SS; Ray SK
    DNA Res; 2022 Jun; 29(4):. PubMed ID: 35920776
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Analysis of Stop Codons within Prokaryotic Protein-Coding Genes Suggests Frequent Readthrough Events.
    Belinky F; Ganguly I; Poliakov E; Yurchenko V; Rogozin IB
    Int J Mol Sci; 2021 Feb; 22(4):. PubMed ID: 33672790
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Comparative study: nonsynonymous and synonymous substitution of SARS-CoV-2, SARS-CoV, and MERS-CoV genome.
    Sohpal VK
    Genomics Inform; 2021 Jun; 19(2):e15. PubMed ID: 34261300
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Synonymous codon usage in Escherichia coli: selection for translational accuracy.
    Stoletzki N; Eyre-Walker A
    Mol Biol Evol; 2007 Feb; 24(2):374-81. PubMed ID: 17101719
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Weak selection on synonymous codons substantially inflates
    Rahman S; Kosakovsky Pond SL; Webb A; Hey J
    Proc Natl Acad Sci U S A; 2021 May; 118(20):. PubMed ID: 33972434
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Detecting positive and purifying selection at synonymous sites in yeast and worm.
    Zhou T; Gu W; Wilke CO
    Mol Biol Evol; 2010 Aug; 27(8):1912-22. PubMed ID: 20231333
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Nonsynonymous, synonymous and nonsense mutations in human cancer-related genes undergo stronger purifying selections than expectation.
    Chu D; Wei L
    BMC Cancer; 2019 Apr; 19(1):359. PubMed ID: 30991970
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Why time matters: codon evolution and the temporal dynamics of dN/dS.
    Mugal CF; Wolf JB; Kaj I
    Mol Biol Evol; 2014 Jan; 31(1):212-31. PubMed ID: 24129904
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Why are translationally sub-optimal synonymous codons used in Escherichia coli?
    Smith NG; Eyre-Walker A
    J Mol Evol; 2001 Sep; 53(3):225-36. PubMed ID: 11523009
    [TBL] [Abstract][Full Text] [Related]  

  • 10. The relationship between dN/dS and scaled selection coefficients.
    Spielman SJ; Wilke CO
    Mol Biol Evol; 2015 Apr; 32(4):1097-108. PubMed ID: 25576365
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Low rates of synonymous mutations in sequences of Mycobacterium tuberculosis GyrA and KatG genes.
    Khrustalev VV; Arjomandzadegan M; Barkovsky EV; Titov LP
    Tuberculosis (Edinb); 2012 Jul; 92(4):333-44. PubMed ID: 22521568
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A counting renaissance: combining stochastic mapping and empirical Bayes to quickly detect amino acid sites under positive selection.
    Lemey P; Minin VN; Bielejec F; Kosakovsky Pond SL; Suchard MA
    Bioinformatics; 2012 Dec; 28(24):3248-56. PubMed ID: 23064000
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Selection intensity for codon bias.
    Hartl DL; Moriyama EN; Sawyer SA
    Genetics; 1994 Sep; 138(1):227-34. PubMed ID: 8001789
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Analysis of selection in protein-coding sequences accounting for common biases.
    Del Amparo R; Branco C; Arenas J; Vicens A; Arenas M
    Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33479739
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A beginners guide to estimating the non-synonymous to synonymous rate ratio of all protein-coding genes in a genome.
    Jeffares DC; Tomiczek B; Sojo V; dos Reis M
    Methods Mol Biol; 2015; 1201():65-90. PubMed ID: 25388108
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The influence of heterogeneous codon frequencies along sequences on the estimation of molecular adaptation.
    Del Amparo R; Vicens A; Arenas M
    Bioinformatics; 2020 Jan; 36(2):430-436. PubMed ID: 31304972
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Molecular evolution of the Bovini tribe (Bovidae, Bovinae): is there evidence of rapid evolution or reduced selective constraint in Domestic cattle?
    MacEachern S; McEwan J; McCulloch A; Mather A; Savin K; Goddard M
    BMC Genomics; 2009 Apr; 10():179. PubMed ID: 19393048
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Mutations to Less-Preferred Synonymous Codons in a Highly Expressed Gene of Escherichia coli: Fitness and Epistatic Interactions.
    Hauber DJ; Grogan DW; DeBry RW
    PLoS One; 2016; 11(1):e0146375. PubMed ID: 26727272
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Improved inference of site-specific positive selection under a generalized parametric codon model when there are multinucleotide mutations and multiple nonsynonymous rates.
    Dunn KA; Kenney T; Gu H; Bielawski JP
    BMC Evol Biol; 2019 Jan; 19(1):22. PubMed ID: 30642241
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Molecular evolution of synonymous codon usage in Populus.
    Ingvarsson PK
    BMC Evol Biol; 2008 Nov; 8():307. PubMed ID: 18983655
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.