These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

120 related articles for article (PubMed ID: 35931273)

  • 1. DeepPlnc: Bi-modal deep learning for highly accurate plant lncRNA discovery.
    Ritu ; Gupta S; Sharma NK; Shankar R
    Genomics; 2022 Sep; 114(5):110443. PubMed ID: 35931273
    [TBL] [Abstract][Full Text] [Related]  

  • 2. miWords: transformer-based composite deep learning for highly accurate discovery of pre-miRNA regions across plant genomes.
    Gupta S; Shankar R
    Brief Bioinform; 2023 Mar; 24(2):. PubMed ID: 36907657
    [TBL] [Abstract][Full Text] [Related]  

  • 3. PLIT: An alignment-free computational tool for identification of long non-coding RNAs in plant transcriptomic datasets.
    Deshpande S; Shuttleworth J; Yang J; Taramonli S; England M
    Comput Biol Med; 2019 Feb; 105():169-181. PubMed ID: 30665012
    [TBL] [Abstract][Full Text] [Related]  

  • 4. FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome.
    Wucher V; Legeai F; Hédan B; Rizk G; Lagoutte L; Leeb T; Jagannathan V; Cadieu E; David A; Lohi H; Cirera S; Fredholm M; Botherel N; Leegwater PAJ; Le Béguec C; Fieten H; Johnson J; Alföldi J; André C; Lindblad-Toh K; Hitte C; Derrien T
    Nucleic Acids Res; 2017 May; 45(8):e57. PubMed ID: 28053114
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Machine Learning-Based Annotation of Long Noncoding RNAs Using PLncPRO.
    Khemka NK; Singh U; Dwivedi AK; Jain M
    Methods Mol Biol; 2020; 2107():253-260. PubMed ID: 31893451
    [TBL] [Abstract][Full Text] [Related]  

  • 6. PLEK: a tool for predicting long non-coding RNAs and messenger RNAs based on an improved k-mer scheme.
    Li A; Zhang J; Zhou Z
    BMC Bioinformatics; 2014 Sep; 15(1):311. PubMed ID: 25239089
    [TBL] [Abstract][Full Text] [Related]  

  • 7. EVlncRNA-Dpred: improved prediction of experimentally validated lncRNAs by deep learning.
    Zhou B; Ding M; Feng J; Ji B; Huang P; Zhang J; Yu X; Cao Z; Yang Y; Zhou Y; Wang J
    Brief Bioinform; 2023 Jan; 24(1):. PubMed ID: 36573492
    [TBL] [Abstract][Full Text] [Related]  

  • 8. NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants.
    Zhao L; Wang J; Li Y; Song T; Wu Y; Fang S; Bu D; Li H; Sun L; Pei D; Zheng Y; Huang J; Xu M; Chen R; Zhao Y; He S
    Nucleic Acids Res; 2021 Jan; 49(D1):D165-D171. PubMed ID: 33196801
    [TBL] [Abstract][Full Text] [Related]  

  • 9. RNA-seq-based genome annotation and identification of long-noncoding RNAs in the grapevine cultivar 'Riesling'.
    Harris ZN; Kovacs LG; Londo JP
    BMC Genomics; 2017 Dec; 18(1):937. PubMed ID: 29197332
    [TBL] [Abstract][Full Text] [Related]  

  • 10. PlncRNA-HDeep: plant long noncoding RNA prediction using hybrid deep learning based on two encoding styles.
    Meng J; Kang Q; Chang Z; Luan Y
    BMC Bioinformatics; 2021 May; 22(Suppl 3):242. PubMed ID: 33980138
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Evolutionary analysis across mammals reveals distinct classes of long non-coding RNAs.
    Chen J; Shishkin AA; Zhu X; Kadri S; Maza I; Guttman M; Hanna JH; Regev A; Garber M
    Genome Biol; 2016 Feb; 17():19. PubMed ID: 26838501
    [TBL] [Abstract][Full Text] [Related]  

  • 12. LncADeep: an ab initio lncRNA identification and functional annotation tool based on deep learning.
    Yang C; Yang L; Zhou M; Xie H; Zhang C; Wang MD; Zhu H
    Bioinformatics; 2018 Nov; 34(22):3825-3834. PubMed ID: 29850816
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A systematic evaluation of bioinformatics tools for identification of long noncoding RNAs.
    Duan Y; Zhang W; Cheng Y; Shi M; Xia XQ
    RNA; 2021 Jan; 27(1):80-98. PubMed ID: 33055239
    [TBL] [Abstract][Full Text] [Related]  

  • 14. AnnoLnc: A One-Stop Portal to Systematically Annotate Novel Human Long Noncoding RNAs.
    Yang DC; Ke L; Ding Y; Gao G
    Methods Mol Biol; 2021; 2254():111-131. PubMed ID: 33326073
    [TBL] [Abstract][Full Text] [Related]  

  • 15. zflncRNApedia: A Comprehensive Online Resource for Zebrafish Long Non-Coding RNAs.
    Dhiman H; Kapoor S; Sivadas A; Sivasubbu S; Scaria V
    PLoS One; 2015; 10(6):e0129997. PubMed ID: 26065909
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Cross-species inference of long non-coding RNAs greatly expands the ruminant transcriptome.
    Bush SJ; Muriuki C; McCulloch MEB; Farquhar IL; Clark EL; Hume DA
    Genet Sel Evol; 2018 Apr; 50(1):20. PubMed ID: 29690875
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Deep learning tools are top performers in long non-coding RNA prediction.
    Ammunét T; Wang N; Khan S; Elo LL
    Brief Funct Genomics; 2022 May; 21(3):230-241. PubMed ID: 35136929
    [TBL] [Abstract][Full Text] [Related]  

  • 18. lncRNADetector: a bioinformatics pipeline for long non-coding RNA identification and MAPslnc: a repository of medicinal and aromatic plant lncRNAs.
    Shukla B; Gupta S; Srivastava G; Sharma A; Shukla AK; Shasany AK
    RNA Biol; 2021 Dec; 18(12):2290-2295. PubMed ID: 33685383
    [TBL] [Abstract][Full Text] [Related]  

  • 19. PLncDB V2.0: a comprehensive encyclopedia of plant long noncoding RNAs.
    Jin J; Lu P; Xu Y; Li Z; Yu S; Liu J; Wang H; Chua NH; Cao P
    Nucleic Acids Res; 2021 Jan; 49(D1):D1489-D1495. PubMed ID: 33079992
    [TBL] [Abstract][Full Text] [Related]  

  • 20. lncRNA-MFDL: identification of human long non-coding RNAs by fusing multiple features and using deep learning.
    Fan XN; Zhang SW
    Mol Biosyst; 2015 Mar; 11(3):892-7. PubMed ID: 25588719
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.