527 related articles for article (PubMed ID: 35945546)
1. Comparison of ONT and CCS sequencing technologies on the polyploid genome of a medicinal plant showed that high error rate of ONT reads are not suitable for self-correction.
Zeng P; Tian Z; Han Y; Zhang W; Zhou T; Peng Y; Hu H; Cai J
Chin Med; 2022 Aug; 17(1):94. PubMed ID: 35945546
[TBL] [Abstract][Full Text] [Related]
2. Comparison of the two up-to-date sequencing technologies for genome assembly: HiFi reads of Pacific Biosciences Sequel II system and ultralong reads of Oxford Nanopore.
Lang D; Zhang S; Ren P; Liang F; Sun Z; Meng G; Tan Y; Li X; Lai Q; Han L; Wang D; Hu F; Wang W; Liu S
Gigascience; 2020 Dec; 9(12):. PubMed ID: 33319909
[TBL] [Abstract][Full Text] [Related]
3. Evaluating long-read de novo assembly tools for eukaryotic genomes: insights and considerations.
Cosma BM; Shirali Hossein Zade R; Jordan EN; van Lent P; Peng C; Pillay S; Abeel T
Gigascience; 2022 Dec; 12():. PubMed ID: 38000912
[TBL] [Abstract][Full Text] [Related]
4. Comparison of De Novo Assembly Strategies for Bacterial Genomes.
Zhang P; Jiang D; Wang Y; Yao X; Luo Y; Yang Z
Int J Mol Sci; 2021 Jul; 22(14):. PubMed ID: 34299288
[TBL] [Abstract][Full Text] [Related]
5. Evaluation of assembly methods combining long-reads and short-reads to obtain
Shin SC; Choi W; Lee J; Kim HJ; Kim HW
3 Biotech; 2020 Nov; 10(11):480. PubMed ID: 33094089
[TBL] [Abstract][Full Text] [Related]
6. Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes.
De Maio N; Shaw LP; Hubbard A; George S; Sanderson ND; Swann J; Wick R; AbuOun M; Stubberfield E; Hoosdally SJ; Crook DW; Peto TEA; Sheppard AE; Bailey MJ; Read DS; Anjum MF; Walker AS; Stoesser N; On Behalf Of The Rehab Consortium
Microb Genom; 2019 Sep; 5(9):. PubMed ID: 31483244
[TBL] [Abstract][Full Text] [Related]
7. Evaluation of strategies for the assembly of diverse bacterial genomes using MinION long-read sequencing.
Goldstein S; Beka L; Graf J; Klassen JL
BMC Genomics; 2019 Jan; 20(1):23. PubMed ID: 30626323
[TBL] [Abstract][Full Text] [Related]
8. ARAMIS: From systematic errors of NGS long reads to accurate assemblies.
Sacristán-Horcajada E; González-de la Fuente S; Peiró-Pastor R; Carrasco-Ramiro F; Amils R; Requena JM; Berenguer J; Aguado B
Brief Bioinform; 2021 Nov; 22(6):. PubMed ID: 34013348
[TBL] [Abstract][Full Text] [Related]
9. Highly accurate long reads are crucial for realizing the potential of biodiversity genomics.
Hotaling S; Wilcox ER; Heckenhauer J; Stewart RJ; Frandsen PB
BMC Genomics; 2023 Mar; 24(1):117. PubMed ID: 36927511
[TBL] [Abstract][Full Text] [Related]
10. SMRT sequencing only de novo assembly of the sugar beet (Beta vulgaris) chloroplast genome.
Stadermann KB; Weisshaar B; Holtgräwe D
BMC Bioinformatics; 2015 Sep; 16(1):295. PubMed ID: 26377912
[TBL] [Abstract][Full Text] [Related]
11. Are we there yet? Benchmarking low-coverage nanopore long-read sequencing for the assembling of mitochondrial genomes using the vulnerable silky shark Carcharhinus falciformis.
Baeza JA; García-De León FJ
BMC Genomics; 2022 Apr; 23(1):320. PubMed ID: 35459089
[TBL] [Abstract][Full Text] [Related]
12. Chromosome-scale assembly comparison of the Korean Reference Genome KOREF from PromethION and PacBio with Hi-C mapping information.
Kim HS; Jeon S; Kim C; Kim YK; Cho YS; Kim J; Blazyte A; Manica A; Lee S; Bhak J
Gigascience; 2019 Dec; 8(12):. PubMed ID: 31794015
[TBL] [Abstract][Full Text] [Related]
13. Error analysis of the PacBio sequencing CCS reads.
Pourmohammadi R; Abouei J; Anpalagan A
Int J Biostat; 2023 Nov; 19(2):439-453. PubMed ID: 37155831
[TBL] [Abstract][Full Text] [Related]
14. Polishing the Oxford Nanopore long-read assemblies of bacterial pathogens with Illumina short reads to improve genomic analyses.
Chen Z; Erickson DL; Meng J
Genomics; 2021 May; 113(3):1366-1377. PubMed ID: 33716184
[TBL] [Abstract][Full Text] [Related]
15. Genome assembly using Nanopore-guided long and error-free DNA reads.
Madoui MA; Engelen S; Cruaud C; Belser C; Bertrand L; Alberti A; Lemainque A; Wincker P; Aury JM
BMC Genomics; 2015 Apr; 16(1):327. PubMed ID: 25927464
[TBL] [Abstract][Full Text] [Related]
16. HISEA: HIerarchical SEed Aligner for PacBio data.
Khiste N; Ilie L
BMC Bioinformatics; 2017 Dec; 18(1):564. PubMed ID: 29258419
[TBL] [Abstract][Full Text] [Related]
17. KOREF_S1: phased, parental trio-binned Korean reference genome using long reads and Hi-C sequencing methods.
Kim HS; Jeon S; Kim Y; Kim C; Bhak J; Bhak J
Gigascience; 2022 Mar; 11():. PubMed ID: 35333300
[TBL] [Abstract][Full Text] [Related]
18. Comparison of long-read sequencing technologies in interrogating bacteria and fly genomes.
Tvedte ES; Gasser M; Sparklin BC; Michalski J; Hjelmen CE; Johnston JS; Zhao X; Bromley R; Tallon LJ; Sadzewicz L; Rasko DA; Dunning Hotopp JC
G3 (Bethesda); 2021 Jun; 11(6):. PubMed ID: 33768248
[TBL] [Abstract][Full Text] [Related]
19. Two long read-based genome assembly and annotation of polyploidy woody plants, Hibiscus syriacus L. using PacBio and Nanopore platforms.
Koo H; Lee GW; Ko SR; Go S; Kwon SY; Kim YM; Shin AY
Sci Data; 2023 Oct; 10(1):713. PubMed ID: 37853021
[TBL] [Abstract][Full Text] [Related]
20. A comprehensive investigation of metagenome assembly by linked-read sequencing.
Zhang L; Fang X; Liao H; Zhang Z; Zhou X; Han L; Chen Y; Qiu Q; Li SC
Microbiome; 2020 Nov; 8(1):156. PubMed ID: 33176883
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
