204 related articles for article (PubMed ID: 35964419)
1. CH-Bin: A convex hull based approach for binning metagenomic contigs.
Chandrasiri S; Perera T; Dilhara A; Perera I; Mallawaarachchi V
Comput Biol Chem; 2022 Oct; 100():107734. PubMed ID: 35964419
[TBL] [Abstract][Full Text] [Related]
2. Accurate Binning of Metagenomic Contigs Using Composition, Coverage, and Assembly Graphs.
Mallawaarachchi V; Lin Y
J Comput Biol; 2022 Dec; 29(12):1357-1376. PubMed ID: 36367700
[TBL] [Abstract][Full Text] [Related]
3. GraphBin: refined binning of metagenomic contigs using assembly graphs.
Mallawaarachchi V; Wickramarachchi A; Lin Y
Bioinformatics; 2020 Jun; 36(11):3307-3313. PubMed ID: 32167528
[TBL] [Abstract][Full Text] [Related]
4. HiFine: integrating Hi-C-based and shotgun-based methods to refine binning of metagenomic contigs.
Du Y; Sun F
Bioinformatics; 2022 May; 38(11):2973-2979. PubMed ID: 35482530
[TBL] [Abstract][Full Text] [Related]
5. CoMet: a workflow using contig coverage and composition for binning a metagenomic sample with high precision.
Herath D; Tang SL; Tandon K; Ackland D; Halgamuge SK
BMC Bioinformatics; 2017 Dec; 18(Suppl 16):571. PubMed ID: 29297295
[TBL] [Abstract][Full Text] [Related]
6. Improving contig binning of metagenomic data using [Formula: see text] oligonucleotide frequency dissimilarity.
Wang Y; Wang K; Lu YY; Sun F
BMC Bioinformatics; 2017 Sep; 18(1):425. PubMed ID: 28931373
[TBL] [Abstract][Full Text] [Related]
7. COCACOLA: binning metagenomic contigs using sequence COmposition, read CoverAge, CO-alignment and paired-end read LinkAge.
Lu YY; Chen T; Fuhrman JA; Sun F
Bioinformatics; 2017 Mar; 33(6):791-798. PubMed ID: 27256312
[TBL] [Abstract][Full Text] [Related]
8. Binning Metagenomic Contigs Using Unsupervised Clustering and Reference Databases.
Jiang Z; Li X; Guo L
Interdiscip Sci; 2022 Dec; 14(4):795-803. PubMed ID: 35639335
[TBL] [Abstract][Full Text] [Related]
9. Unsupervised Binning of Metagenomic Assembled Contigs Using Improved Fuzzy C-Means Method.
Liu Y; Hou T; Kang B; Liu F
IEEE/ACM Trans Comput Biol Bioinform; 2017; 14(6):1459-1467. PubMed ID: 27295684
[TBL] [Abstract][Full Text] [Related]
10. SolidBin: improving metagenome binning with semi-supervised normalized cut.
Wang Z; Wang Z; Lu YY; Sun F; Zhu S
Bioinformatics; 2019 Nov; 35(21):4229-4238. PubMed ID: 30977806
[TBL] [Abstract][Full Text] [Related]
11. CoCoNet: an efficient deep learning tool for viral metagenome binning.
Arisdakessian CG; Nigro OD; Steward GF; Poisson G; Belcaid M
Bioinformatics; 2021 Sep; 37(18):2803-2810. PubMed ID: 33822891
[TBL] [Abstract][Full Text] [Related]
12. BMC3C: binning metagenomic contigs using codon usage, sequence composition and read coverage.
Yu G; Jiang Y; Wang J; Zhang H; Luo H
Bioinformatics; 2018 Dec; 34(24):4172-4179. PubMed ID: 29947757
[TBL] [Abstract][Full Text] [Related]
13. Improving metagenomic binning results with overlapped bins using assembly graphs.
Mallawaarachchi VG; Wickramarachchi AS; Lin Y
Algorithms Mol Biol; 2021 May; 16(1):3. PubMed ID: 33947431
[TBL] [Abstract][Full Text] [Related]
14. Evaluating metagenomics tools for genome binning with real metagenomic datasets and CAMI datasets.
Yue Y; Huang H; Qi Z; Dou HM; Liu XY; Han TF; Chen Y; Song XJ; Zhang YH; Tu J
BMC Bioinformatics; 2020 Jul; 21(1):334. PubMed ID: 32723290
[TBL] [Abstract][Full Text] [Related]
15. MetaWRAP-a flexible pipeline for genome-resolved metagenomic data analysis.
Uritskiy GV; DiRuggiero J; Taylor J
Microbiome; 2018 Sep; 6(1):158. PubMed ID: 30219103
[TBL] [Abstract][Full Text] [Related]
16. MetaCluster-TA: taxonomic annotation for metagenomic data based on assembly-assisted binning.
Wang Y; Leung H; Yiu S; Chin F
BMC Genomics; 2014; 15 Suppl 1(Suppl 1):S12. PubMed ID: 24564377
[TBL] [Abstract][Full Text] [Related]
17. Effective binning of metagenomic contigs using contrastive multi-view representation learning.
Wang Z; You R; Han H; Liu W; Sun F; Zhu S
Nat Commun; 2024 Jan; 15(1):585. PubMed ID: 38233391
[TBL] [Abstract][Full Text] [Related]
18. Binning metagenomic contigs by coverage and composition.
Alneberg J; Bjarnason BS; de Bruijn I; Schirmer M; Quick J; Ijaz UZ; Lahti L; Loman NJ; Andersson AF; Quince C
Nat Methods; 2014 Nov; 11(11):1144-6. PubMed ID: 25218180
[TBL] [Abstract][Full Text] [Related]
19. BinaRena: a dedicated interactive platform for human-guided exploration and binning of metagenomes.
Pavia MJ; Chede A; Wu Z; Cadillo-Quiroz H; Zhu Q
Microbiome; 2023 Aug; 11(1):186. PubMed ID: 37596696
[TBL] [Abstract][Full Text] [Related]
20. Binning long reads in metagenomics datasets using composition and coverage information.
Wickramarachchi A; Lin Y
Algorithms Mol Biol; 2022 Jul; 17(1):14. PubMed ID: 35821155
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
