145 related articles for article (PubMed ID: 35965322)
1. OpenVar: functional annotation of variants in non-canonical open reading frames.
Brunet MA; Leblanc S; Roucou X
Cell Biosci; 2022 Aug; 12(1):130. PubMed ID: 35965322
[TBL] [Abstract][Full Text] [Related]
2. How to Illuminate the Dark Proteome Using the Multi-omic OpenProt Resource.
Brunet MA; Lekehal AM; Roucou X
Curr Protoc Bioinformatics; 2020 Sep; 71(1):e103. PubMed ID: 32780568
[TBL] [Abstract][Full Text] [Related]
3. Mass Spectrometry-Based Proteomics Analyses Using the OpenProt Database to Unveil Novel Proteins Translated from Non-Canonical Open Reading Frames.
Brunet MA; Roucou X
J Vis Exp; 2019 Apr; (146):. PubMed ID: 31033953
[TBL] [Abstract][Full Text] [Related]
4. OpenProt 2021: deeper functional annotation of the coding potential of eukaryotic genomes.
Brunet MA; Lucier JF; Levesque M; Leblanc S; Jacques JF; Al-Saedi HRH; Guilloy N; Grenier F; Avino M; Fournier I; Salzet M; Ouangraoua A; Scott MS; Boisvert FM; Roucou X
Nucleic Acids Res; 2021 Jan; 49(D1):D380-D388. PubMed ID: 33179748
[TBL] [Abstract][Full Text] [Related]
5. OpenProt 2.0 builds a path to the functional characterization of alternative proteins.
Leblanc S; Yala F; Provencher N; Lucier JF; Levesque M; Lapointe X; Jacques JF; Fournier I; Salzet M; Ouangraoua A; Scott MS; Boisvert FM; Brunet MA; Roucou X
Nucleic Acids Res; 2024 Jan; 52(D1):D522-D528. PubMed ID: 37956315
[TBL] [Abstract][Full Text] [Related]
6. Reconsidering proteomic diversity with functional investigation of small ORFs and alternative ORFs.
Brunet MA; Leblanc S; Roucou X
Exp Cell Res; 2020 Aug; 393(1):112057. PubMed ID: 32387289
[TBL] [Abstract][Full Text] [Related]
7. What can Ribo-seq and proteomics tell us about the non-canonical proteome?
Prensner JR; Abelin JG; Kok LW; Clauser KR; Mudge JM; Ruiz-Orera J; Bassani-Sternberg M; Deutsch EW; van Heesch S
bioRxiv; 2023 May; ():. PubMed ID: 37292611
[TBL] [Abstract][Full Text] [Related]
8. [Analysis, identification and correction of some errors of model refseqs appeared in NCBI Human Gene Database by in silico cloning and experimental verification of novel human genes].
Zhang DL; Ji L; Li YD
Yi Chuan Xue Bao; 2004 May; 31(5):431-43. PubMed ID: 15478601
[TBL] [Abstract][Full Text] [Related]
9. OpenProt: a more comprehensive guide to explore eukaryotic coding potential and proteomes.
Brunet MA; Brunelle M; Lucier JF; Delcourt V; Levesque M; Grenier F; Samandi S; Leblanc S; Aguilar JD; Dufour P; Jacques JF; Fournier I; Ouangraoua A; Scott MS; Boisvert FM; Roucou X
Nucleic Acids Res; 2019 Jan; 47(D1):D403-D410. PubMed ID: 30299502
[TBL] [Abstract][Full Text] [Related]
10. Genome-wide functional annotation and structural verification of metabolic ORFeome of Chlamydomonas reinhardtii.
Ghamsari L; Balaji S; Shen Y; Yang X; Balcha D; Fan C; Hao T; Yu H; Papin JA; Salehi-Ashtiani K
BMC Genomics; 2011 Jun; 12 Suppl 1(Suppl 1):S4. PubMed ID: 21810206
[TBL] [Abstract][Full Text] [Related]
11. Variations in Nomenclature of Clinical Variants between Annotation Tools.
Park KJ; Park JH
Lab Med; 2022 May; 53(3):242-245. PubMed ID: 34612497
[TBL] [Abstract][Full Text] [Related]
12. Pan-genomic open reading frames: A potential supplement of single nucleotide polymorphisms in estimation of heritability and genomic prediction.
Li Z; Simianer H
PLoS Genet; 2020 Aug; 16(8):e1008995. PubMed ID: 32833967
[TBL] [Abstract][Full Text] [Related]
13. Investigating Open Reading Frames in Known and Novel Transcripts using ORFanage.
Varabyou A; Erdogdu B; Salzberg SL; Pertea M
Nat Comput Sci; 2023 Aug; 3(8):700-708. PubMed ID: 38098813
[TBL] [Abstract][Full Text] [Related]
14. Investigating Open Reading Frames in Known and Novel Transcripts using ORFanage.
Varabyou A; Erdogdu B; Salzberg SL; Pertea M
bioRxiv; 2023 Mar; ():. PubMed ID: 36993373
[TBL] [Abstract][Full Text] [Related]
15. Recognition of the polycistronic nature of human genes is critical to understanding the genotype-phenotype relationship.
Brunet MA; Levesque SA; Hunting DJ; Cohen AA; Roucou X
Genome Res; 2018 May; 28(5):609-624. PubMed ID: 29626081
[TBL] [Abstract][Full Text] [Related]
16. The first complete genome sequence of the African swine fever virus genotype X and serogroup 7 isolated in domestic pigs from the Democratic Republic of Congo.
Bisimwa PN; Ongus JR; Steinaa L; Bisimwa EB; Bochere E; Machuka EM; Entfellner JD; Okoth E; Pelle R
Virol J; 2021 Jan; 18(1):23. PubMed ID: 33478547
[TBL] [Abstract][Full Text] [Related]
17. Choice of transcripts and software has a large effect on variant annotation.
McCarthy DJ; Humburg P; Kanapin A; Rivas MA; Gaulton K; Cazier JB; Donnelly P
Genome Med; 2014; 6(3):26. PubMed ID: 24944579
[TBL] [Abstract][Full Text] [Related]
18. The translation of non-canonical open reading frames controls mucosal immunity.
Jackson R; Kroehling L; Khitun A; Bailis W; Jarret A; York AG; Khan OM; Brewer JR; Skadow MH; Duizer C; Harman CCD; Chang L; Bielecki P; Solis AG; Steach HR; Slavoff S; Flavell RA
Nature; 2018 Dec; 564(7736):434-438. PubMed ID: 30542152
[TBL] [Abstract][Full Text] [Related]
19. Pinstripe: a suite of programs for integrating transcriptomic and proteomic datasets identifies novel proteins and improves differentiation of protein-coding and non-coding genes.
Gascoigne DK; Cheetham SW; Cattenoz PB; Clark MB; Amaral PP; Taft RJ; Wilhelm D; Dinger ME; Mattick JS
Bioinformatics; 2012 Dec; 28(23):3042-50. PubMed ID: 23044541
[TBL] [Abstract][Full Text] [Related]
20. ORF-FINDER: a vector for high-throughput gene identification.
Rombel IT; Sykes KF; Rayner S; Johnston SA
Gene; 2002 Jan; 282(1-2):33-41. PubMed ID: 11814675
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
