BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

199 related articles for article (PubMed ID: 36012512)

  • 1. RNA-As-Graphs Motif Atlas-Dual Graph Library of RNA Modules and Viral Frameshifting-Element Applications.
    Zhu Q; Petingi L; Schlick T
    Int J Mol Sci; 2022 Aug; 23(16):. PubMed ID: 36012512
    [TBL] [Abstract][Full Text] [Related]  

  • 2. An extended dual graph library and partitioning algorithm applicable to pseudoknotted RNA structures.
    Jain S; Saju S; Petingi L; Schlick T
    Methods; 2019 Jun; 162-163():74-84. PubMed ID: 30928508
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Dual Graph Partitioning Highlights a Small Group of Pseudoknot-Containing RNA Submotifs.
    Jain S; Bayrak CS; Petingi L; Schlick T
    Genes (Basel); 2018 Jul; 9(8):. PubMed ID: 30044451
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Computational prediction of riboswitch tertiary structures including pseudoknots by RAGTOP: a hierarchical graph sampling approach.
    Kim N; Zahran M; Schlick T
    Methods Enzymol; 2015; 553():115-35. PubMed ID: 25726463
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Identification of novel RNA design candidates by clustering the extended RNA-As-Graphs library.
    Jain S; Zhu Q; Paz ASP; Schlick T
    Biochim Biophys Acta Gen Subj; 2020 Jun; 1864(6):129534. PubMed ID: 31954797
    [TBL] [Abstract][Full Text] [Related]  

  • 6. RAG-3D: a search tool for RNA 3D substructures.
    Zahran M; Sevim Bayrak C; Elmetwaly S; Schlick T
    Nucleic Acids Res; 2015 Oct; 43(19):9474-88. PubMed ID: 26304547
    [TBL] [Abstract][Full Text] [Related]  

  • 7. RNA graph partitioning for the discovery of RNA modularity: a novel application of graph partition algorithm to biology.
    Kim N; Zheng Z; Elmetwaly S; Schlick T
    PLoS One; 2014; 9(9):e106074. PubMed ID: 25188578
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A Fiedler Vector Scoring Approach for Novel RNA Motif Selection.
    Zhu Q; Schlick T
    J Phys Chem B; 2021 Feb; 125(4):1144-1155. PubMed ID: 33471540
    [TBL] [Abstract][Full Text] [Related]  

  • 9. F-RAG: Generating Atomic Coordinates from RNA Graphs by Fragment Assembly.
    Jain S; Schlick T
    J Mol Biol; 2017 Nov; 429(23):3587-3605. PubMed ID: 28988954
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Inverse folding with RNA-As-Graphs produces a large pool of candidate sequences with target topologies.
    Jain S; Tao Y; Schlick T
    J Struct Biol; 2020 Mar; 209(3):107438. PubMed ID: 31874236
    [TBL] [Abstract][Full Text] [Related]  

  • 11. FR3D: finding local and composite recurrent structural motifs in RNA 3D structures.
    Sarver M; Zirbel CL; Stombaugh J; Mokdad A; Leontis NB
    J Math Biol; 2008 Jan; 56(1-2):215-52. PubMed ID: 17694311
    [TBL] [Abstract][Full Text] [Related]  

  • 12. RNAMotifScanX: a graph alignment approach for RNA structural motif identification.
    Zhong C; Zhang S
    RNA; 2015 Mar; 21(3):333-46. PubMed ID: 25595715
    [TBL] [Abstract][Full Text] [Related]  

  • 13. RAG: an update to the RNA-As-Graphs resource.
    Izzo JA; Kim N; Elmetwaly S; Schlick T
    BMC Bioinformatics; 2011 May; 12():219. PubMed ID: 21627789
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Predicting Large RNA-Like Topologies by a Knowledge-Based Clustering Approach.
    Baba N; Elmetwaly S; Kim N; Schlick T
    J Mol Biol; 2016 Feb; 428(5 Pt A):811-821. PubMed ID: 26478223
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Structure-altering mutations of the SARS-CoV-2 frameshifting RNA element.
    Schlick T; Zhu Q; Jain S; Yan S
    Biophys J; 2021 Mar; 120(6):1040-1053. PubMed ID: 33096082
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Evolution of coronavirus frameshifting elements: Competing stem networks explain conservation and variability.
    Yan S; Zhu Q; Hohl J; Dong A; Schlick T
    Proc Natl Acad Sci U S A; 2023 May; 120(20):e2221324120. PubMed ID: 37155888
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Automated classification of RNA 3D motifs and the RNA 3D Motif Atlas.
    Petrov AI; Zirbel CL; Leontis NB
    RNA; 2013 Oct; 19(10):1327-40. PubMed ID: 23970545
    [TBL] [Abstract][Full Text] [Related]  

  • 18. RAG: RNA-As-Graphs database--concepts, analysis, and features.
    Gan HH; Fera D; Zorn J; Shiffeldrim N; Tang M; Laserson U; Kim N; Schlick T
    Bioinformatics; 2004 May; 20(8):1285-91. PubMed ID: 14962931
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Crystal structure of a luteoviral RNA pseudoknot and model for a minimal ribosomal frameshifting motif.
    Pallan PS; Marshall WS; Harp J; Jewett FC; Wawrzak Z; Brown BA; Rich A; Egli M
    Biochemistry; 2005 Aug; 44(34):11315-22. PubMed ID: 16114868
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Using sequence signatures and kink-turn motifs in knowledge-based statistical potentials for RNA structure prediction.
    Bayrak CS; Kim N; Schlick T
    Nucleic Acids Res; 2017 May; 45(9):5414-5422. PubMed ID: 28158755
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.