130 related articles for article (PubMed ID: 36043348)
1. Mutual effects between single-stranded DNA conformation and Na
Sun LZ; Qian JL; Cai P; Xu X
Phys Chem Chem Phys; 2022 Sep; 24(35):20867-20881. PubMed ID: 36043348
[TBL] [Abstract][Full Text] [Related]
2. Competition between Stacking and Divalent Cation-Mediated Electrostatic Interactions Determines the Conformations of Short DNA Sequences.
Mondal B; Chakraborty D; Hori N; Nguyen HT; Thirumalai D
J Chem Theory Comput; 2024 Apr; 20(7):2934-2946. PubMed ID: 38498914
[TBL] [Abstract][Full Text] [Related]
3. Structure, stability and specificity of the binding of ssDNA and ssRNA with proteins.
Pal A; Levy Y
PLoS Comput Biol; 2019 Apr; 15(4):e1006768. PubMed ID: 30933978
[TBL] [Abstract][Full Text] [Related]
4. Polyelectrolyte properties of single stranded DNA measured using SAXS and single-molecule FRET: Beyond the wormlike chain model.
Meisburger SP; Sutton JL; Chen H; Pabit SA; Kirmizialtin S; Elber R; Pollack L
Biopolymers; 2013 Dec; 99(12):1032-45. PubMed ID: 23606337
[TBL] [Abstract][Full Text] [Related]
5. The impact of base stacking on the conformations and electrostatics of single-stranded DNA.
Plumridge A; Meisburger SP; Andresen K; Pollack L
Nucleic Acids Res; 2017 Apr; 45(7):3932-3943. PubMed ID: 28334825
[TBL] [Abstract][Full Text] [Related]
6. Salt contribution to the flexibility of single-stranded nucleic acid offinite length.
Wang FH; Wu YY; Tan ZJ
Biopolymers; 2013 Jun; 99(6):370-81. PubMed ID: 23529689
[TBL] [Abstract][Full Text] [Related]
7. Na
Rao YF; Sun LZ; Luo MB
Int J Biol Macromol; 2024 May; 267(Pt 1):131273. PubMed ID: 38569994
[TBL] [Abstract][Full Text] [Related]
8. Ion-mediated nucleic acid helix-helix interactions.
Tan ZJ; Chen SJ
Biophys J; 2006 Jul; 91(2):518-36. PubMed ID: 16648172
[TBL] [Abstract][Full Text] [Related]
9. Generalized Manning Condensation Model Captures the RNA Ion Atmosphere.
Hayes RL; Noel JK; Mandic A; Whitford PC; Sanbonmatsu KY; Mohanty U; Onuchic JN
Phys Rev Lett; 2015 Jun; 114(25):258105. PubMed ID: 26197147
[TBL] [Abstract][Full Text] [Related]
10. Ab initio predictions for 3D structure and stability of single- and double-stranded DNAs in ion solutions.
Mu ZC; Tan YL; Zhang BG; Liu J; Shi YZ
PLoS Comput Biol; 2022 Oct; 18(10):e1010501. PubMed ID: 36260618
[TBL] [Abstract][Full Text] [Related]
11. Effect of confinement on DNA, solvent and counterion dynamics in a model biological nanopore.
Markosyan S; De Biase PM; Czapla L; Samoylova O; Singh G; Cuervo J; Tieleman DP; Noskov SY
Nanoscale; 2014 Aug; 6(15):9006-16. PubMed ID: 24968858
[TBL] [Abstract][Full Text] [Related]
12. Differences in secondary structure between packaged and unpackaged single-stranded DNA of bacteriophage phi X174 determined by Raman spectroscopy: a model for phi X174 DNA packaging.
Benevides JM; Stow PL; Ilag LL; Incardona NL; Thomas GJ
Biochemistry; 1991 May; 30(20):4855-63. PubMed ID: 1827990
[TBL] [Abstract][Full Text] [Related]
13. Quantifying the ion atmosphere of unfolded, single-stranded nucleic acids using equilibrium dialysis and single-molecule methods.
Jacobson DR; Saleh OA
Nucleic Acids Res; 2016 May; 44(8):3763-71. PubMed ID: 27036864
[TBL] [Abstract][Full Text] [Related]
14. Impact of Ion-Mixing Entropy on Orientational Preferences of DNA Helices: FRET Measurements and Computer Simulations.
Templeton C; Hamilton I; Russell R; Elber R
J Phys Chem B; 2023 Oct; 127(41):8796-8808. PubMed ID: 37815452
[TBL] [Abstract][Full Text] [Related]
15. Density-functional theory and Monte Carlo simulation study on the electric double layer around DNA in mixed-size counterion systems.
Wang K; Yu YX; Gao GH; Luo GS
J Chem Phys; 2005 Dec; 123(23):234904. PubMed ID: 16392946
[TBL] [Abstract][Full Text] [Related]
16. Electrostatic, steric, and hydration interactions favor Na(+) condensation around DNA compared with K(+).
Savelyev A; Papoian GA
J Am Chem Soc; 2006 Nov; 128(45):14506-18. PubMed ID: 17090034
[TBL] [Abstract][Full Text] [Related]
17. Effects of Polymer Length and Salt Concentration on the Transport of ssDNA in Nanofluidic Channels.
Qian W; Doi K; Kawano S
Biophys J; 2017 Mar; 112(5):838-849. PubMed ID: 28297643
[TBL] [Abstract][Full Text] [Related]
18. Application of the Poisson Boltzmann polyelectrolyte model for analysis of equilibria between single-, double-, and triple-stranded polynucleotides in the presence of K(+), Na(+), and Mg(2+) ions.
Korolev N; Lyubartsev AP; Nordenskiöld L
J Biomol Struct Dyn; 2002 Oct; 20(2):275-90. PubMed ID: 12354079
[TBL] [Abstract][Full Text] [Related]
19. Competitive sorption of monovalent and divalent ions by highly charged globular macromolecules.
Nikam R; Xu X; Kanduč M; Dzubiella J
J Chem Phys; 2020 Jul; 153(4):044904. PubMed ID: 32752704
[TBL] [Abstract][Full Text] [Related]
20. Determination of Ion Atmosphere Effects on the Nucleic Acid Electrostatic Potential and Ligand Association Using AH
Allred BE; Gebala M; Herschlag D
J Am Chem Soc; 2017 Jun; 139(22):7540-7548. PubMed ID: 28489947
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]