193 related articles for article (PubMed ID: 36069454)
1. MetaPhage: an Automated Pipeline for Analyzing, Annotating, and Classifying Bacteriophages in Metagenomics Sequencing Data.
Pandolfo M; Telatin A; Lazzari G; Adriaenssens EM; Vitulo N
mSystems; 2022 Oct; 7(5):e0074122. PubMed ID: 36069454
[TBL] [Abstract][Full Text] [Related]
2. What the Phage: a scalable workflow for the identification and analysis of phage sequences.
Marquet M; Hölzer M; Pletz MW; Viehweger A; Makarewicz O; Ehricht R; Brandt C
Gigascience; 2022 Nov; 11():. PubMed ID: 36399058
[TBL] [Abstract][Full Text] [Related]
3. ViroProfiler: a containerized bioinformatics pipeline for viral metagenomic data analysis.
Ru J; Khan Mirzaei M; Xue J; Peng X; Deng L
Gut Microbes; 2023; 15(1):2192522. PubMed ID: 36998174
[TBL] [Abstract][Full Text] [Related]
4. Mining, analyzing, and integrating viral signals from metagenomic data.
Zheng T; Li J; Ni Y; Kang K; Misiakou MA; Imamovic L; Chow BKC; Rode AA; Bytzer P; Sommer M; Panagiotou G
Microbiome; 2019 Mar; 7(1):42. PubMed ID: 30890181
[TBL] [Abstract][Full Text] [Related]
5. Microbial Diversity and Phage-Host Interactions in the Georgian Coastal Area of the Black Sea Revealed by Whole Genome Metagenomic Sequencing.
Jaiani E; Kusradze I; Kokashvili T; Geliashvili N; Janelidze N; Kotorashvili A; Kotaria N; Guchmanidze A; Tediashvili M; Prangishvili D
Mar Drugs; 2020 Nov; 18(11):. PubMed ID: 33202695
[TBL] [Abstract][Full Text] [Related]
6. Phages in the Gut Ecosystem.
Zuppi M; Hendrickson HL; O'Sullivan JM; Vatanen T
Front Cell Infect Microbiol; 2021; 11():822562. PubMed ID: 35059329
[TBL] [Abstract][Full Text] [Related]
7. VIBES: A Workflow for Annotating and Visualizing Viral Sequences Integrated into Bacterial Genomes.
Copeland CJ; Roddy JW; Schmidt AK; Secor PR; Wheeler TJ
bioRxiv; 2023 Oct; ():. PubMed ID: 37905003
[TBL] [Abstract][Full Text] [Related]
8. ViraPipe: scalable parallel pipeline for viral metagenome analysis from next generation sequencing reads.
Maarala AI; Bzhalava Z; Dillner J; Heljanko K; Bzhalava D
Bioinformatics; 2018 Mar; 34(6):928-935. PubMed ID: 29106455
[TBL] [Abstract][Full Text] [Related]
9. Bacteriophage classification for assembled contigs using graph convolutional network.
Shang J; Jiang J; Sun Y
Bioinformatics; 2021 Jul; 37(Suppl_1):i25-i33. PubMed ID: 34252923
[TBL] [Abstract][Full Text] [Related]
10. Isolation of a Host-Confined Phage Metagenome Allows the Detection of Phages Both Capable and Incapable of Plaque Formation.
Friedrich I; Hertel R
Methods Mol Biol; 2023; 2555():195-203. PubMed ID: 36306088
[TBL] [Abstract][Full Text] [Related]
11. Bacteriophage-Mediated Perturbation of Defined Bacterial Communities in an
Attai H; Wilde J; Liu R; Chopyk J; Garcia AG; Allen-Vercoe E; Pride D
Microbiol Spectr; 2022 Jun; 10(3):e0113522. PubMed ID: 35638779
[TBL] [Abstract][Full Text] [Related]
12. A simple, reproducible and cost-effective procedure to analyse gut phageome: from phage isolation to bioinformatic approach.
d'Humières C; Touchon M; Dion S; Cury J; Ghozlane A; Garcia-Garcera M; Bouchier C; Ma L; Denamur E; P C Rocha E
Sci Rep; 2019 Aug; 9(1):11331. PubMed ID: 31383878
[TBL] [Abstract][Full Text] [Related]
13. Seeker: alignment-free identification of bacteriophage genomes by deep learning.
Auslander N; Gussow AB; Benler S; Wolf YI; Koonin EV
Nucleic Acids Res; 2020 Dec; 48(21):e121. PubMed ID: 33045744
[TBL] [Abstract][Full Text] [Related]
14. Ecological and functional roles of bacteriophages in contrasting environments: marine, terrestrial and human gut.
Brown TL; Charity OJ; Adriaenssens EM
Curr Opin Microbiol; 2022 Dec; 70():102229. PubMed ID: 36347213
[TBL] [Abstract][Full Text] [Related]
15. Enrichment, Sequencing, and Identification of DNA Bacteriophages from Fecal Samples.
Lamy-Besnier Q; Garneau JR
Methods Mol Biol; 2024; 2732():133-144. PubMed ID: 38060122
[TBL] [Abstract][Full Text] [Related]
16. Optimizing protocols for extraction of bacteriophages prior to metagenomic analyses of phage communities in the human gut.
Castro-Mejía JL; Muhammed MK; Kot W; Neve H; Franz CM; Hansen LH; Vogensen FK; Nielsen DS
Microbiome; 2015 Nov; 3():64. PubMed ID: 26577924
[TBL] [Abstract][Full Text] [Related]
17. Interactions between bacterial and phage communities in natural environments.
Chevallereau A; Pons BJ; van Houte S; Westra ER
Nat Rev Microbiol; 2022 Jan; 20(1):49-62. PubMed ID: 34373631
[TBL] [Abstract][Full Text] [Related]
18. Phables: from fragmented assemblies to high-quality bacteriophage genomes.
Mallawaarachchi V; Roach MJ; Decewicz P; Papudeshi B; Giles SK; Grigson SR; Bouras G; Hesse RD; Inglis LK; Hutton ALK; Dinsdale EA; Edwards RA
Bioinformatics; 2023 Oct; 39(10):. PubMed ID: 37738590
[TBL] [Abstract][Full Text] [Related]
19. Uncovering a hidden diversity: optimized protocols for the extraction of dsDNA bacteriophages from soil.
Göller PC; Haro-Moreno JM; Rodriguez-Valera F; Loessner MJ; Gómez-Sanz E
Microbiome; 2020 Feb; 8(1):17. PubMed ID: 32046783
[TBL] [Abstract][Full Text] [Related]
20. Bacteriophage Distributions and Temporal Variability in the Ocean's Interior.
Luo E; Aylward FO; Mende DR; DeLong EF
mBio; 2017 Nov; 8(6):. PubMed ID: 29184020
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
