196 related articles for article (PubMed ID: 36082286)
1. Plant-DTI: Extending the landscape of TF protein and DNA interaction in plants by a machine learning-based approach.
Ruengsrichaiya B; Nukoolkit C; Kalapanulak S; Saithong T
Front Plant Sci; 2022; 13():970018. PubMed ID: 36082286
[TBL] [Abstract][Full Text] [Related]
2. Identifying functional transcription factor binding sites in yeast by considering their positional preference in the promoters.
Lai FJ; Chiu CC; Yang TH; Huang YM; Wu WS
PLoS One; 2013; 8(12):e83791. PubMed ID: 24386279
[TBL] [Abstract][Full Text] [Related]
3. Improving analysis of transcription factor binding sites within ChIP-Seq data based on topological motif enrichment.
Worsley Hunt R; Mathelier A; Del Peso L; Wasserman WW
BMC Genomics; 2014 Jun; 15(1):472. PubMed ID: 24927817
[TBL] [Abstract][Full Text] [Related]
4. TSPTFBS: a Docker image for trans-species prediction of transcription factor binding sites in plants.
Liu L; Zhang G; He S; Hu X
Bioinformatics; 2021 Apr; 37(2):260-262. PubMed ID: 33416862
[TBL] [Abstract][Full Text] [Related]
5. The next generation of transcription factor binding site prediction.
Mathelier A; Wasserman WW
PLoS Comput Biol; 2013; 9(9):e1003214. PubMed ID: 24039567
[TBL] [Abstract][Full Text] [Related]
6. Transcription factor binding site clusters identify target genes with similar tissue-wide expression and buffer against mutations.
Lu R; Rogan PK
F1000Res; 2018; 7():1933. PubMed ID: 31001412
[No Abstract] [Full Text] [Related]
7. Identifying cooperative transcription factors in yeast using multiple data sources.
Lai FJ; Jhu MH; Chiu CC; Huang YM; Wu WS
BMC Syst Biol; 2014; 8 Suppl 5(Suppl 5):S2. PubMed ID: 25559499
[TBL] [Abstract][Full Text] [Related]
8. Tree-based position weight matrix approach to model transcription factor binding site profiles.
Bi Y; Kim H; Gupta R; Davuluri RV
PLoS One; 2011; 6(9):e24210. PubMed ID: 21912677
[TBL] [Abstract][Full Text] [Related]
9. Statistics of protein-DNA binding and the total number of binding sites for a transcription factor in the mammalian genome.
Kuznetsov VA; Singh O; Jenjaroenpun P
BMC Genomics; 2010 Feb; 11 Suppl 1(Suppl 1):S12. PubMed ID: 20158869
[TBL] [Abstract][Full Text] [Related]
10. Genome-wide identification of transcription factors and transcription-factor binding sites in oleaginous microalgae Nannochloropsis.
Hu J; Wang D; Li J; Jing G; Ning K; Xu J
Sci Rep; 2014 Jun; 4():5454. PubMed ID: 24965723
[TBL] [Abstract][Full Text] [Related]
11. UniBind: maps of high-confidence direct TF-DNA interactions across nine species.
Puig RR; Boddie P; Khan A; Castro-Mondragon JA; Mathelier A
BMC Genomics; 2021 Jun; 22(1):482. PubMed ID: 34174819
[TBL] [Abstract][Full Text] [Related]
12. Molecular and structural considerations of TF-DNA binding for the generation of biologically meaningful and accurate phylogenetic footprinting analysis: the LysR-type transcriptional regulator family as a study model.
Oliver P; Peralta-Gil M; Tabche ML; Merino E
BMC Genomics; 2016 Aug; 17(1):686. PubMed ID: 27567672
[TBL] [Abstract][Full Text] [Related]
13. BERT-TFBS: a novel BERT-based model for predicting transcription factor binding sites by transfer learning.
Wang K; Zeng X; Zhou J; Liu F; Luan X; Wang X
Brief Bioinform; 2024 Mar; 25(3):. PubMed ID: 38701417
[TBL] [Abstract][Full Text] [Related]
14. Transcriptome dynamics of developing maize leaves and genomewide prediction of cis elements and their cognate transcription factors.
Yu CP; Chen SC; Chang YM; Liu WY; Lin HH; Lin JJ; Chen HJ; Lu YJ; Wu YH; Lu MY; Lu CH; Shih AC; Ku MS; Shiu SH; Wu SH; Li WH
Proc Natl Acad Sci U S A; 2015 May; 112(19):E2477-86. PubMed ID: 25918418
[TBL] [Abstract][Full Text] [Related]
15. Discovering approximate-associated sequence patterns for protein-DNA interactions.
Chan TM; Wong KC; Lee KH; Wong MH; Lau CK; Tsui SK; Leung KS
Bioinformatics; 2011 Feb; 27(4):471-8. PubMed ID: 21193520
[TBL] [Abstract][Full Text] [Related]
16. Assessment of clusters of transcription factor binding sites in relationship to human promoter, CpG islands and gene expression.
Murakami K; Kojima T; Sakaki Y
BMC Genomics; 2004 Feb; 5(1):16. PubMed ID: 15053842
[TBL] [Abstract][Full Text] [Related]
17. Transcription Factor Information System (TFIS): A Tool for Detection of Transcription Factor Binding Sites.
Narad P; Kumar A; Chakraborty A; Patni P; Sengupta A; Wadhwa G; Upadhyaya KC
Interdiscip Sci; 2017 Sep; 9(3):378-391. PubMed ID: 27052996
[TBL] [Abstract][Full Text] [Related]
18. TSPTFBS 2.0: trans-species prediction of transcription factor binding sites and identification of their core motifs in plants.
Cheng H; Liu L; Zhou Y; Deng K; Ge Y; Hu X
Front Plant Sci; 2023; 14():1175837. PubMed ID: 37229121
[TBL] [Abstract][Full Text] [Related]
19. A novel method for improved accuracy of transcription factor binding site prediction.
Khamis AM; Motwalli O; Oliva R; Jankovic BR; Medvedeva YA; Ashoor H; Essack M; Gao X; Bajic VB
Nucleic Acids Res; 2018 Jul; 46(12):e72. PubMed ID: 29617876
[TBL] [Abstract][Full Text] [Related]
20. Identification of Plant Transcription Factor DNA-Binding Sites Using seq-DAP-seq.
Hutin S; Blanc-Mathieu R; Rieu P; Parcy F; Lai X; Zubieta C
Methods Mol Biol; 2023; 2698():119-145. PubMed ID: 37682473
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
