289 related articles for article (PubMed ID: 36130276)
1. Highly significant improvement of protein sequence alignments with AlphaFold2.
Baltzis A; Mansouri L; Jin S; Langer BE; Erb I; Notredame C
Bioinformatics; 2022 Nov; 38(22):5007-5011. PubMed ID: 36130276
[TBL] [Abstract][Full Text] [Related]
2. Improvement of protein tertiary and quaternary structure predictions using the ReFOLD refinement method and the AlphaFold2 recycling process.
Adiyaman R; Edmunds NS; Genc AG; Alharbi SMA; McGuffin LJ
Bioinform Adv; 2023; 3(1):vbad078. PubMed ID: 37359722
[TBL] [Abstract][Full Text] [Related]
3. End-to-end learning of multiple sequence alignments with differentiable Smith-Waterman.
Petti S; Bhattacharya N; Rao R; Dauparas J; Thomas N; Zhou J; Rush AM; Koo P; Ovchinnikov S
Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36355460
[TBL] [Abstract][Full Text] [Related]
4. A deep dilated convolutional residual network for predicting interchain contacts of protein homodimers.
Roy RS; Quadir F; Soltanikazemi E; Cheng J
Bioinformatics; 2022 Mar; 38(7):1904-1910. PubMed ID: 35134816
[TBL] [Abstract][Full Text] [Related]
5. Sequence alignment using machine learning for accurate template-based protein structure prediction.
Makigaki S; Ishida T
Bioinformatics; 2020 Jan; 36(1):104-111. PubMed ID: 31197318
[TBL] [Abstract][Full Text] [Related]
6. PC_ali: a tool for improved multiple alignments and evolutionary inference based on a hybrid protein sequence and structure similarity score.
Bastolla U; Abia D; Piette O
Bioinformatics; 2023 Nov; 39(11):. PubMed ID: 37847775
[TBL] [Abstract][Full Text] [Related]
7. UPP2: fast and accurate alignment of datasets with fragmentary sequences.
Park M; Ivanovic S; Chu G; Shen C; Warnow T
Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36625535
[TBL] [Abstract][Full Text] [Related]
8. 3D-equivariant graph neural networks for protein model quality assessment.
Chen C; Chen X; Morehead A; Wu T; Cheng J
Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36637199
[TBL] [Abstract][Full Text] [Related]
9. Identifying functionally informative evolutionary sequence profiles.
Gil N; Fiser A
Bioinformatics; 2018 Apr; 34(8):1278-1286. PubMed ID: 29211823
[TBL] [Abstract][Full Text] [Related]
10. NX4: a web-based visualization of large multiple sequence alignments.
Solano-Roman A; Cruz-Castillo C; Offenhuber D; Colubri A
Bioinformatics; 2019 Nov; 35(22):4800-4802. PubMed ID: 31161215
[TBL] [Abstract][Full Text] [Related]
11. MAGUS: Multiple sequence Alignment using Graph clUStering.
Smirnov V; Warnow T
Bioinformatics; 2021 Jul; 37(12):1666-1672. PubMed ID: 33252662
[TBL] [Abstract][Full Text] [Related]
12. chainCleaner improves genome alignment specificity and sensitivity.
Suarez HG; Langer BE; Ladde P; Hiller M
Bioinformatics; 2017 Jun; 33(11):1596-1603. PubMed ID: 28108446
[TBL] [Abstract][Full Text] [Related]
13. ConsAlifold: considering RNA structural alignments improves prediction accuracy of RNA consensus secondary structures.
Tagashira M; Asai K
Bioinformatics; 2022 Jan; 38(3):710-719. PubMed ID: 34694364
[TBL] [Abstract][Full Text] [Related]
14. ManyFold: an efficient and flexible library for training and validating protein folding models.
Villegas-Morcillo A; Robinson L; Flajolet A; Barrett TD
Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36495196
[TBL] [Abstract][Full Text] [Related]
15. Improving sequence-based modeling of protein families using secondary-structure quality assessment.
Malbranke C; Bikard D; Cocco S; Monasson R
Bioinformatics; 2021 Nov; 37(22):4083-4090. PubMed ID: 34117879
[TBL] [Abstract][Full Text] [Related]
16. A low-complexity add-on score for protein remote homology search with COMER.
Margelevicius M
Bioinformatics; 2018 Jun; 34(12):2037-2045. PubMed ID: 29390109
[TBL] [Abstract][Full Text] [Related]
17. Making automated multiple alignments of very large numbers of protein sequences.
Sievers F; Dineen D; Wilm A; Higgins DG
Bioinformatics; 2013 Apr; 29(8):989-95. PubMed ID: 23428640
[TBL] [Abstract][Full Text] [Related]
18. High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABER-TOOTH.
Teichert F; Minning J; Bastolla U; Porto M
BMC Bioinformatics; 2010 May; 11():251. PubMed ID: 20470364
[TBL] [Abstract][Full Text] [Related]
19. ViralMSA: massively scalable reference-guided multiple sequence alignment of viral genomes.
Moshiri N
Bioinformatics; 2021 May; 37(5):714-716. PubMed ID: 32814953
[TBL] [Abstract][Full Text] [Related]
20. Reciprocal best structure hits: using AlphaFold models to discover distant homologues.
Monzon V; Paysan-Lafosse T; Wood V; Bateman A
Bioinform Adv; 2022; 2(1):vbac072. PubMed ID: 36408459
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
