236 related articles for article (PubMed ID: 36130303)
1. Exploring Conflicts in Whole Genome Phylogenetics: A Case Study Within Manakins (Aves: Pipridae).
Zhao M; Kurtis SM; White ND; Moncrieff AE; Leite RN; Brumfield RT; Braun EL; Kimball RT
Syst Biol; 2023 May; 72(1):161-178. PubMed ID: 36130303
[TBL] [Abstract][Full Text] [Related]
2. Phylogenomics of manakins (Aves: Pipridae) using alternative locus filtering strategies based on informativeness.
Leite RN; Kimball RT; Braun EL; Derryberry EP; Hosner PA; Derryberry GE; Anciães M; McKay JS; Aleixo A; Ribas CC; Brumfield RT; Cracraft J
Mol Phylogenet Evol; 2021 Feb; 155():107013. PubMed ID: 33217578
[TBL] [Abstract][Full Text] [Related]
3. Phylogeny and systematics of Chiroxiphia and Antilophia manakins (Aves, Pipridae).
Silva SM; Agne CE; Aleixo A; Bonatto SL
Mol Phylogenet Evol; 2018 Oct; 127():706-711. PubMed ID: 29906610
[TBL] [Abstract][Full Text] [Related]
4. A molecular phylogenetic hypothesis for the manakins (Aves: Pipridae).
McKay BD; Barker FK; Mays HL; Doucet SM; Hill GE
Mol Phylogenet Evol; 2010 May; 55(2):733-7. PubMed ID: 20188842
[TBL] [Abstract][Full Text] [Related]
5. Ecological niche differentiation in Chiroxiphia and Antilophia manakins (Aves: Pipridae).
Villegas M; Loiselle BA; Kimball RT; Blake JG
PLoS One; 2021; 16(1):e0243760. PubMed ID: 33439873
[TBL] [Abstract][Full Text] [Related]
6. The gene tree delusion.
Springer MS; Gatesy J
Mol Phylogenet Evol; 2016 Jan; 94(Pt A):1-33. PubMed ID: 26238460
[TBL] [Abstract][Full Text] [Related]
7. Larger, unfiltered datasets are more effective at resolving phylogenetic conflict: Introns, exons, and UCEs resolve ambiguities in Golden-backed frogs (Anura: Ranidae; genus Hylarana).
Chan KO; Hutter CR; Wood PL; Grismer LL; Brown RM
Mol Phylogenet Evol; 2020 Oct; 151():106899. PubMed ID: 32590046
[TBL] [Abstract][Full Text] [Related]
8. To Include or Not to Include: The Impact of Gene Filtering on Species Tree Estimation Methods.
Molloy EK; Warnow T
Syst Biol; 2018 Mar; 67(2):285-303. PubMed ID: 29029338
[TBL] [Abstract][Full Text] [Related]
9. Quantification of congruence among gene trees with polytomies using overall success of resolution for phylogenomic coalescent analyses.
Simmons MP; Goloboff PA; Stöver BC; Springer MS; Gatesy J
Cladistics; 2023 Oct; 39(5):418-436. PubMed ID: 37096985
[TBL] [Abstract][Full Text] [Related]
10. The Perfect Storm: Gene Tree Estimation Error, Incomplete Lineage Sorting, and Ancient Gene Flow Explain the Most Recalcitrant Ancient Angiosperm Clade, Malpighiales.
Cai L; Xi Z; Lemmon EM; Lemmon AR; Mast A; Buddenhagen CE; Liu L; Davis CC
Syst Biol; 2021 Apr; 70(3):491-507. PubMed ID: 33169797
[TBL] [Abstract][Full Text] [Related]
11. Collapsing dubiously resolved gene-tree branches in phylogenomic coalescent analyses.
Simmons MP; Gatesy J
Mol Phylogenet Evol; 2021 May; 158():107092. PubMed ID: 33545272
[TBL] [Abstract][Full Text] [Related]
12. Model Choice, Missing Data, and Taxon Sampling Impact Phylogenomic Inference of Deep Basidiomycota Relationships.
Prasanna AN; Gerber D; Kijpornyongpan T; Aime MC; Doyle VP; Nagy LG
Syst Biol; 2020 Jan; 69(1):17-37. PubMed ID: 31062852
[TBL] [Abstract][Full Text] [Related]
13. Molecular phylogeny of the manakins (Aves: Passeriformes: Pipridae), with a new classification and the description of a new genus.
Ohlson JI; Fjeldså J; Ericson PG
Mol Phylogenet Evol; 2013 Dec; 69(3):796-804. PubMed ID: 23831559
[TBL] [Abstract][Full Text] [Related]
14. Dissecting Incongruence between Concatenation- and Quartet-Based Approaches in Phylogenomic Data.
Shen XX; Steenwyk JL; Rokas A
Syst Biol; 2021 Aug; 70(5):997-1014. PubMed ID: 33616672
[TBL] [Abstract][Full Text] [Related]
15. Analysis of a Rapid Evolutionary Radiation Using Ultraconserved Elements: Evidence for a Bias in Some Multispecies Coalescent Methods.
Meiklejohn KA; Faircloth BC; Glenn TC; Kimball RT; Braun EL
Syst Biol; 2016 Jul; 65(4):612-27. PubMed ID: 26865273
[TBL] [Abstract][Full Text] [Related]
16. Is homoplasy or lineage sorting the source of incongruent mtdna and nuclear gene trees in the stiff-tailed ducks (Nomonyx-Oxyura)?
McCracken K; Sorenson M
Syst Biol; 2005 Feb; 54(1):35-55. PubMed ID: 15805009
[TBL] [Abstract][Full Text] [Related]
17. Estimating species phylogeny from gene-tree probabilities despite incomplete lineage sorting: an example from Melanoplus grasshoppers.
Carstens BC; Knowles LL
Syst Biol; 2007 Jun; 56(3):400-11. PubMed ID: 17520504
[TBL] [Abstract][Full Text] [Related]
18. Modern Phylogenomics: Building Phylogenetic Trees Using the Multispecies Coalescent Model.
Liu L; Anderson C; Pearl D; Edwards SV
Methods Mol Biol; 2019; 1910():211-239. PubMed ID: 31278666
[TBL] [Abstract][Full Text] [Related]
19. Filtration of Gene Trees From 9,000 Exons, Introns, and UCEs Disentangles Conflicting Phylogenomic Relationships in Tree Frogs (Hylidae).
Hutter CR; Duellman W
Genome Biol Evol; 2023 May; 15(5):. PubMed ID: 37129064
[TBL] [Abstract][Full Text] [Related]
20. Coalescent-Based Analyses of Genomic Sequence Data Provide a Robust Resolution of Phylogenetic Relationships among Major Groups of Gibbons.
Shi CM; Yang Z
Mol Biol Evol; 2018 Jan; 35(1):159-179. PubMed ID: 29087487
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]