BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

213 related articles for article (PubMed ID: 36138169)

  • 1. Scalable in situ single-cell profiling by electrophoretic capture of mRNA using EEL FISH.
    Borm LE; Mossi Albiach A; Mannens CCA; Janusauskas J; Özgün C; Fernández-García D; Hodge R; Castillo F; Hedin CRH; Villablanca EJ; Uhlén P; Lein ES; Codeluppi S; Linnarsson S
    Nat Biotechnol; 2023 Feb; 41(2):222-231. PubMed ID: 36138169
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Spatial transcriptome profiling by MERFISH reveals subcellular RNA compartmentalization and cell cycle-dependent gene expression.
    Xia C; Fan J; Emanuel G; Hao J; Zhuang X
    Proc Natl Acad Sci U S A; 2019 Sep; 116(39):19490-19499. PubMed ID: 31501331
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Hybridization-based in situ sequencing (HybISS) for spatially resolved transcriptomics in human and mouse brain tissue.
    Gyllborg D; Langseth CM; Qian X; Choi E; Salas SM; Hilscher MM; Lein ES; Nilsson M
    Nucleic Acids Res; 2020 Nov; 48(19):e112. PubMed ID: 32990747
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Transcriptome-scale super-resolved imaging in tissues by RNA seqFISH.
    Eng CL; Lawson M; Zhu Q; Dries R; Koulena N; Takei Y; Yun J; Cronin C; Karp C; Yuan GC; Cai L
    Nature; 2019 Apr; 568(7751):235-239. PubMed ID: 30911168
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Highly specific multiplexed RNA imaging in tissues with split-FISH.
    Goh JJL; Chou N; Seow WY; Ha N; Cheng CPP; Chang YC; Zhao ZW; Chen KH
    Nat Methods; 2020 Jul; 17(7):689-693. PubMed ID: 32541852
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Rare Cell Detection by Single-Cell RNA Sequencing as Guided by Single-Molecule RNA FISH.
    Torre E; Dueck H; Shaffer S; Gospocic J; Gupte R; Bonasio R; Kim J; Murray J; Raj A
    Cell Syst; 2018 Feb; 6(2):171-179.e5. PubMed ID: 29454938
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Validating transcripts with probes and imaging technology.
    Itzkovitz S; van Oudenaarden A
    Nat Methods; 2011 Apr; 8(4 Suppl):S12-9. PubMed ID: 21451512
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Profiling the transcriptome with RNA SPOTs.
    Eng CL; Shah S; Thomassie J; Cai L
    Nat Methods; 2017 Dec; 14(12):1153-1155. PubMed ID: 29131163
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Reference-based cell type matching of in situ image-based spatial transcriptomics data on primary visual cortex of mouse brain.
    Zhang Y; Miller JA; Park J; Lelieveldt BP; Long B; Abdelaal T; Aevermann BD; Biancalani T; Comiter C; Dzyubachyk O; Eggermont J; Langseth CM; Petukhov V; Scalia G; Vaishnav ED; Zhao Y; Lein ES; Scheuermann RH
    Sci Rep; 2023 Jun; 13(1):9567. PubMed ID: 37311768
    [TBL] [Abstract][Full Text] [Related]  

  • 10. RNA imaging. Spatially resolved, highly multiplexed RNA profiling in single cells.
    Chen KH; Boettiger AN; Moffitt JR; Wang S; Zhuang X
    Science; 2015 Apr; 348(6233):aaa6090. PubMed ID: 25858977
    [TBL] [Abstract][Full Text] [Related]  

  • 11. RNA-seq analysis of the head-kidney transcriptome response to handling-stress in the red cusk-eel (Genypterus chilensis).
    Aballai V; Aedo JE; Maldonado J; Bastias-Molina M; Silva H; Meneses C; Boltaña S; Reyes A; Molina A; Valdés JA
    Comp Biochem Physiol Part D Genomics Proteomics; 2017 Dec; 24():111-117. PubMed ID: 28968511
    [TBL] [Abstract][Full Text] [Related]  

  • 12. MERFISHing for spatial context.
    Shalek AK; Satija R
    Trends Immunol; 2015 Jul; 36(7):390-1. PubMed ID: 26013647
    [TBL] [Abstract][Full Text] [Related]  

  • 13. In Situ Sequencing: A High-Throughput, Multi-Targeted Gene Expression Profiling Technique for Cell Typing in Tissue Sections.
    Hilscher MM; Gyllborg D; Yokota C; Nilsson M
    Methods Mol Biol; 2020; 2148():313-329. PubMed ID: 32394391
    [TBL] [Abstract][Full Text] [Related]  

  • 14. High-performance multiplexed fluorescence in situ hybridization in culture and tissue with matrix imprinting and clearing.
    Moffitt JR; Hao J; Bambah-Mukku D; Lu T; Dulac C; Zhuang X
    Proc Natl Acad Sci U S A; 2016 Dec; 113(50):14456-14461. PubMed ID: 27911841
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Integration of spatial and single-cell transcriptomic data elucidates mouse organogenesis.
    Lohoff T; Ghazanfar S; Missarova A; Koulena N; Pierson N; Griffiths JA; Bardot ES; Eng CL; Tyser RCV; Argelaguet R; Guibentif C; Srinivas S; Briscoe J; Simons BD; Hadjantonakis AK; Göttgens B; Reik W; Nichols J; Cai L; Marioni JC
    Nat Biotechnol; 2022 Jan; 40(1):74-85. PubMed ID: 34489600
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Cell segmentation in imaging-based spatial transcriptomics.
    Petukhov V; Xu RJ; Soldatov RA; Cadinu P; Khodosevich K; Moffitt JR; Kharchenko PV
    Nat Biotechnol; 2022 Mar; 40(3):345-354. PubMed ID: 34650268
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Spatially resolved whole transcriptome profiling in human and mouse tissue using Digital Spatial Profiling.
    Zimmerman SM; Fropf R; Kulasekara BR; Griswold M; Appelbe O; Bahrami A; Boykin R; Buhr DL; Fuhrman K; Hoang ML; Huynh Q; Isgur L; Klock A; Kutchma A; Lasley AE; Liang Y; McKay-Fleisch J; Nelson JS; Nguyen K; Piazza E; Rininger A; Zollinger DR; Rhodes M; Beechem JM
    Genome Res; 2022 Oct; 32(10):1892-1905. PubMed ID: 36100434
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Transcriptomic analysis of the differentiating ovary of the protogynous ricefield eel Monopterus albus.
    Cai J; Yang W; Chen D; Zhang Y; He Z; Zhang W; Zhang L
    BMC Genomics; 2017 Aug; 18(1):573. PubMed ID: 28768496
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Single Molecule RNA FISH (smFISH) in Whole-Mount Mouse Embryonic Organs.
    Wang S
    Curr Protoc Cell Biol; 2019 Jun; 83(1):e79. PubMed ID: 30394692
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomic data with nonuniform cellular densities.
    Miller BF; Bambah-Mukku D; Dulac C; Zhuang X; Fan J
    Genome Res; 2021 Oct; 31(10):1843-1855. PubMed ID: 34035045
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.