171 related articles for article (PubMed ID: 36160046)
1. Sensitive and reproducible cell-free methylome quantification with synthetic spike-in controls.
Wilson SL; Shen SY; Harmon L; Burgener JM; Triche T; Bratman SV; De Carvalho DD; Hoffman MM
Cell Rep Methods; 2022 Sep; 2(9):100294. PubMed ID: 36160046
[TBL] [Abstract][Full Text] [Related]
2. Preparation of cfMeDIP-seq libraries for methylome profiling of plasma cell-free DNA.
Shen SY; Burgener JM; Bratman SV; De Carvalho DD
Nat Protoc; 2019 Oct; 14(10):2749-2780. PubMed ID: 31471598
[TBL] [Abstract][Full Text] [Related]
3. Cell-free DNA methylome profiling by MBD-seq with ultra-low input.
Huang J; Soupir AC; Wang L
Epigenetics; 2022 Mar; 17(3):239-252. PubMed ID: 33724157
[TBL] [Abstract][Full Text] [Related]
4. Methylated DNA immunoprecipitation and high-throughput sequencing (MeDIP-seq) using low amounts of genomic DNA.
Zhao MT; Whyte JJ; Hopkins GM; Kirk MD; Prather RS
Cell Reprogram; 2014 Jun; 16(3):175-84. PubMed ID: 24773292
[TBL] [Abstract][Full Text] [Related]
5. Plasma cell-free DNA variant analysis compared with methylated DNA analysis in renal cell carcinoma.
Lasseter K; Nassar AH; Hamieh L; Berchuck JE; Nuzzo PV; Korthauer K; Shinagare AB; Ogorek B; McKay R; Thorner AR; Lee GM; Braun DA; Bhatt RS; Freedman M; Choueiri TK; Kwiatkowski DJ
Genet Med; 2020 Aug; 22(8):1366-1373. PubMed ID: 32341571
[TBL] [Abstract][Full Text] [Related]
6. Altered cfDNA fragmentation profile in hypomethylated regions as diagnostic markers in breast cancer.
Wang J; Niu Y; Yang M; Shu L; Wang H; Wu X; He Y; Chen P; Zhong G; Tang Z; Zhang S; Guo Q; Wang Y; Yu L; Gou D
Epigenetics Chromatin; 2023 Sep; 16(1):33. PubMed ID: 37740218
[TBL] [Abstract][Full Text] [Related]
7. Liquidhope: methylome and genomic profiling from very limited quantities of plasma-derived DNA.
Trinidad EM; Vidal E; Coronado E; Esteve-Codina A; Castel V; Cañete A; Gut M; Heath S; Font de Mora J
Brief Bioinform; 2023 Jan; 24(1):. PubMed ID: 36611239
[TBL] [Abstract][Full Text] [Related]
8. Prediction model for malignant pulmonary nodules based on cfMeDIP-seq and machine learning.
Qi J; Hong B; Tao R; Sun R; Zhang H; Zhang X; Ji J; Wang S; Liu Y; Deng Q; Wang H; Zhao D; Nie J
Cancer Sci; 2021 Sep; 112(9):3918-3923. PubMed ID: 34251068
[TBL] [Abstract][Full Text] [Related]
9. High-throughput and affordable genome-wide methylation profiling of circulating cell-free DNA by methylated DNA sequencing (MeD-seq) of LpnPI digested fragments.
Deger T; Boers RG; de Weerd V; Angus L; van der Put MMJ; Boers JB; Azmani Z; van IJcken WFJ; Grünhagen DJ; van Dessel LF; Lolkema MPJK; Verhoef C; Sleijfer S; Martens JWM; Gribnau J; Wilting SM
Clin Epigenetics; 2021 Oct; 13(1):196. PubMed ID: 34670587
[TBL] [Abstract][Full Text] [Related]
10. Computational challenges in detection of cancer using cell-free DNA methylation.
Sharma M; Verma RK; Kumar S; Kumar V
Comput Struct Biotechnol J; 2022; 20():26-39. PubMed ID: 34976309
[TBL] [Abstract][Full Text] [Related]
11. Longitudinal monitoring of cell-free DNA methylation in ALK-positive non-small cell lung cancer patients.
Janke F; Angeles AK; Riediger AL; Bauer S; Reck M; Stenzinger A; Schneider MA; Muley T; Thomas M; Christopoulos P; Sültmann H
Clin Epigenetics; 2022 Dec; 14(1):163. PubMed ID: 36461127
[TBL] [Abstract][Full Text] [Related]
12. Detection of ovarian cancer using plasma cell-free DNA methylomes.
Lu H; Liu Y; Wang J; Fu S; Wang L; Huang C; Li J; Xie L; Wang D; Li D; Zhou H; Rao Q
Clin Epigenetics; 2022 Jun; 14(1):74. PubMed ID: 35681212
[TBL] [Abstract][Full Text] [Related]
13. A method for early diagnosis of lung cancer from tumor originated DNA fragments using plasma cfDNA methylome and fragmentome profiles.
Kim YJ; Jeon H; Jeon S; Lee SH; Kim C; Ahn JH; Um H; Woo YJ; Jeong SH; Kim Y; Park HY; Oh HJ; Cho HJ; Bae JH; Kim JH; An S; Kang SB; Jho S; Biro O; Kis D; Kim BC; Kim Y; Kim JH; Kim BC; Bhak J; Oh IJ
Mol Cell Probes; 2022 Dec; 66():101873. PubMed ID: 36379302
[TBL] [Abstract][Full Text] [Related]
14. Cancer Detection and Classification by CpG Island Hypermethylation Signatures in Plasma Cell-Free DNA.
Huang J; Soupir AC; Schlick BD; Teng M; Sahin IH; Permuth JB; Siegel EM; Manley BJ; Pellini B; Wang L
Cancers (Basel); 2021 Nov; 13(22):. PubMed ID: 34830765
[TBL] [Abstract][Full Text] [Related]
15. Detection of renal cell carcinoma using plasma and urine cell-free DNA methylomes.
Nuzzo PV; Berchuck JE; Korthauer K; Spisak S; Nassar AH; Abou Alaiwi S; Chakravarthy A; Shen SY; Bakouny Z; Boccardo F; Steinharter J; Bouchard G; Curran CR; Pan W; Baca SC; Seo JH; Lee GM; Michaelson MD; Chang SL; Waikar SS; Sonpavde G; Irizarry RA; Pomerantz M; De Carvalho DD; Choueiri TK; Freedman ML
Nat Med; 2020 Jul; 26(7):1041-1043. PubMed ID: 32572266
[TBL] [Abstract][Full Text] [Related]
16. DNA methylome profiling at single-base resolution through bisulfite sequencing of 5mC-immunoprecipitated DNA.
Jia Z; Shi Y; Zhang L; Ren Y; Wang T; Xing L; Zhang B; Gao G; Bu R
BMC Biotechnol; 2018 Feb; 18(1):7. PubMed ID: 29409498
[TBL] [Abstract][Full Text] [Related]
17. Comprehensive DNA methylation analysis of tissue of origin of plasma cell-free DNA by methylated CpG tandem amplification and sequencing (MCTA-Seq).
Liu X; Ren J; Luo N; Guo H; Zheng Y; Li J; Tang F; Wen L; Peng J
Clin Epigenetics; 2019 Jun; 11(1):93. PubMed ID: 31234922
[TBL] [Abstract][Full Text] [Related]
18. Epigenetic analysis of cell-free DNA by fragmentomic profiling.
Zhou Q; Kang G; Jiang P; Qiao R; Lam WKJ; Yu SCY; Ma ML; Ji L; Cheng SH; Gai W; Peng W; Shang H; Chan RWY; Chan SL; Wong GLH; Hiraki LT; Volpi S; Wong VWS; Wong J; Chiu RWK; Chan KCA; Lo YMD
Proc Natl Acad Sci U S A; 2022 Nov; 119(44):e2209852119. PubMed ID: 36288287
[TBL] [Abstract][Full Text] [Related]
19. Plasma cell-free DNA methylome profiling in pre- and post-surgery oral cavity squamous cell carcinoma.
Patel KB; Padhya TA; Huang J; Hernandez-Prera JC; Li T; Chung CH; Wang L; Wang X
Mol Carcinog; 2023 Apr; 62(4):493-502. PubMed ID: 36636912
[TBL] [Abstract][Full Text] [Related]
20. The methylome and cell-free DNA: current applications in medicine and pediatric disease.
Spector BL; Harrell L; Sante D; Wyckoff GJ; Willig L
Pediatr Res; 2023 Jul; 94(1):89-95. PubMed ID: 36646885
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]