These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

187 related articles for article (PubMed ID: 36161334)

  • 1. iPro-WAEL: a comprehensive and robust framework for identifying promoters in multiple species.
    Zhang P; Zhang H; Wu H
    Nucleic Acids Res; 2022 Oct; 50(18):10278-10289. PubMed ID: 36161334
    [TBL] [Abstract][Full Text] [Related]  

  • 2. iPromoter-Seqvec: identifying promoters using bidirectional long short-term memory and sequence-embedded features.
    Nguyen-Vo TH; Trinh QH; Nguyen L; Nguyen-Hoang PU; Rahardja S; Nguyen BP
    BMC Genomics; 2022 Oct; 23(Suppl 5):681. PubMed ID: 36192696
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Computational identification of eukaryotic promoters based on cascaded deep capsule neural networks.
    Zhu Y; Li F; Xiang D; Akutsu T; Song J; Jia C
    Brief Bioinform; 2021 Jul; 22(4):. PubMed ID: 33227813
    [TBL] [Abstract][Full Text] [Related]  

  • 4. iPro-GAN: A novel model based on generative adversarial learning for identifying promoters and their strength.
    Qiao H; Zhang S; Xue T; Wang J; Wang B
    Comput Methods Programs Biomed; 2022 Mar; 215():106625. PubMed ID: 35038653
    [TBL] [Abstract][Full Text] [Related]  

  • 5. De-novo discovery of differentially abundant transcription factor binding sites including their positional preference.
    Keilwagen J; Grau J; Paponov IA; Posch S; Strickert M; Grosse I
    PLoS Comput Biol; 2011 Feb; 7(2):e1001070. PubMed ID: 21347314
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Probing transcription factor combinatorics in different promoter classes and in enhancers.
    Vandel J; Cassan O; Lèbre S; Lecellier CH; Bréhélin L
    BMC Genomics; 2019 Feb; 20(1):103. PubMed ID: 30709337
    [TBL] [Abstract][Full Text] [Related]  

  • 7. GPMiner: an integrated system for mining combinatorial cis-regulatory elements in mammalian gene group.
    Lee TY; Chang WC; Hsu JB; Chang TH; Shien DM
    BMC Genomics; 2012; 13 Suppl 1(Suppl 1):S3. PubMed ID: 22369687
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Identification of estrogen-responsive genes using a genome-wide analysis of promoter elements for transcription factor binding sites.
    Kamalakaran S; Radhakrishnan SK; Beck WT
    J Biol Chem; 2005 Jun; 280(22):21491-7. PubMed ID: 15790569
    [TBL] [Abstract][Full Text] [Related]  

  • 9. EnsemPro: an ensemble approach to predicting transcription start sites in human genomic DNA sequences.
    Won HH; Kim MJ; Kim S; Kim JW
    Genomics; 2008 Mar; 91(3):259-66. PubMed ID: 18164178
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Recognition of prokaryotic and eukaryotic promoters using convolutional deep learning neural networks.
    Umarov RK; Solovyev VV
    PLoS One; 2017; 12(2):e0171410. PubMed ID: 28158264
    [TBL] [Abstract][Full Text] [Related]  

  • 11. iPro2L-PSTKNC: A Two-Layer Predictor for Discovering Various Types of Promoters by Position Specific of Nucleotide Composition.
    Lyu Y; He W; Li S; Zou Q; Guo F
    IEEE J Biomed Health Inform; 2021 Jun; 25(6):2329-2337. PubMed ID: 32976109
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Finding functional promoter motifs by computational methods: a word of caution.
    Chowdhary R; Wong L; Bajic VB
    Int J Bioinform Res Appl; 2006; 2(3):282-8. PubMed ID: 18048166
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Bioinformatic prediction of transcription factor binding sites at promoter regions of genes for photoperiod and vernalization responses in model and temperate cereal plants.
    Peng FY; Hu Z; Yang RC
    BMC Genomics; 2016 Aug; 17():573. PubMed ID: 27503086
    [TBL] [Abstract][Full Text] [Related]  

  • 14. MicroRNA promoter element discovery in Arabidopsis.
    Megraw M; Baev V; Rusinov V; Jensen ST; Kalantidis K; Hatzigeorgiou AG
    RNA; 2006 Sep; 12(9):1612-9. PubMed ID: 16888323
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Plant promoter prediction with confidence estimation.
    Shahmuradov IA; Solovyev VV; Gammerman AJ
    Nucleic Acids Res; 2005; 33(3):1069-76. PubMed ID: 15722481
    [TBL] [Abstract][Full Text] [Related]  

  • 16. DeepLncPro: an interpretable convolutional neural network model for identifying long non-coding RNA promoters.
    Zhang T; Tang Q; Nie F; Zhao Q; Chen W
    Brief Bioinform; 2022 Nov; 23(6):. PubMed ID: 36209437
    [TBL] [Abstract][Full Text] [Related]  

  • 17. DeepD2V: A Novel Deep Learning-Based Framework for Predicting Transcription Factor Binding Sites from Combined DNA Sequence.
    Deng L; Wu H; Liu X; Liu H
    Int J Mol Sci; 2021 May; 22(11):. PubMed ID: 34073774
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Computational Prediction of Sigma-54 Promoters in Bacterial Genomes by Integrating Motif Finding and Machine Learning Strategies.
    Liu B; Han L; Liu X; Wu J; Ma Q
    IEEE/ACM Trans Comput Biol Bioinform; 2019; 16(4):1211-1218. PubMed ID: 29993815
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Genome-wide identification of transcription start sites, promoters and transcription factor binding sites in E. coli.
    Mendoza-Vargas A; Olvera L; Olvera M; Grande R; Vega-Alvarado L; Taboada B; Jimenez-Jacinto V; Salgado H; Juárez K; Contreras-Moreira B; Huerta AM; Collado-Vides J; Morett E
    PLoS One; 2009 Oct; 4(10):e7526. PubMed ID: 19838305
    [TBL] [Abstract][Full Text] [Related]  

  • 20. TSS seq based core promoter architecture in blood feeding Tsetse fly (Glossina morsitans morsitans) vector of Trypanosomiasis.
    Mwangi S; Attardo G; Suzuki Y; Aksoy S; Christoffels A
    BMC Genomics; 2015 Sep; 16(1):722. PubMed ID: 26394619
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.