These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

298 related articles for article (PubMed ID: 36167284)

  • 41. Application and design considerations for 3'-end sequencing using click-chemistry.
    Jensen MK; Elrod ND; Yalamanchili HK; Ji P; Lin A; Liu Z; Wagner EJ
    Methods Enzymol; 2021; 655():1-23. PubMed ID: 34183117
    [TBL] [Abstract][Full Text] [Related]  

  • 42. PolyA-miner: accurate assessment of differential alternative poly-adenylation from 3'Seq data using vector projections and non-negative matrix factorization.
    Yalamanchili HK; Alcott CE; Ji P; Wagner EJ; Zoghbi HY; Liu Z
    Nucleic Acids Res; 2020 Jul; 48(12):e69. PubMed ID: 32463457
    [TBL] [Abstract][Full Text] [Related]  

  • 43. Data Analysis in Single-Cell Transcriptome Sequencing.
    Gao S
    Methods Mol Biol; 2018; 1754():311-326. PubMed ID: 29536451
    [TBL] [Abstract][Full Text] [Related]  

  • 44. PolyAMiner-Bulk: A Machine Learning Based Bioinformatics Algorithm to Infer and Decode Alternative Polyadenylation Dynamics from bulk RNA-seq data.
    Jonnakuti VS; Wagner EJ; Maletić-Savatić M; Liu Z; Yalamanchili HK
    bioRxiv; 2023 Jan; ():. PubMed ID: 36747700
    [TBL] [Abstract][Full Text] [Related]  

  • 45. movAPA: modeling and visualization of dynamics of alternative polyadenylation across biological samples.
    Ye W; Liu T; Fu H; Ye C; Ji G; Wu X
    Bioinformatics; 2021 Aug; 37(16):2470-2472. PubMed ID: 33258917
    [TBL] [Abstract][Full Text] [Related]  

  • 46. QAPA: a new method for the systematic analysis of alternative polyadenylation from RNA-seq data.
    Ha KCH; Blencowe BJ; Morris Q
    Genome Biol; 2018 Mar; 19(1):45. PubMed ID: 29592814
    [TBL] [Abstract][Full Text] [Related]  

  • 47. RNA-binding proteins in regulation of alternative cleavage and polyadenylation.
    Zheng D; Tian B
    Adv Exp Med Biol; 2014; 825():97-127. PubMed ID: 25201104
    [TBL] [Abstract][Full Text] [Related]  

  • 48. Genome-wide identification and predictive modeling of tissue-specific alternative polyadenylation.
    Hafez D; Ni T; Mukherjee S; Zhu J; Ohler U
    Bioinformatics; 2013 Jul; 29(13):i108-16. PubMed ID: 23812974
    [TBL] [Abstract][Full Text] [Related]  

  • 49. Analysis of alternative cleavage and polyadenylation in mature and differentiating neurons using RNA-seq data.
    Guvenek A; Tian B
    Quant Biol; 2018 Sep; 6(3):253-266. PubMed ID: 31380142
    [TBL] [Abstract][Full Text] [Related]  

  • 50. A novel computational method enables RNA editome profiling during human hematopoiesis from scRNA-seq data.
    Wu Y; Hao S; Xu X; Dong G; Ouyang W; Liu C; Sun HX
    Sci Rep; 2023 Jun; 13(1):10335. PubMed ID: 37365211
    [TBL] [Abstract][Full Text] [Related]  

  • 51. Single-Cell RNA Sequencing Analysis: A Step-by-Step Overview.
    Slovin S; Carissimo A; Panariello F; Grimaldi A; Bouché V; Gambardella G; Cacchiarelli D
    Methods Mol Biol; 2021; 2284():343-365. PubMed ID: 33835452
    [TBL] [Abstract][Full Text] [Related]  

  • 52. Genome-Wide Profiling of Polyadenylation Events in Maize Using High-Throughput Transcriptomic Sequences.
    Jafar Z; Tariq S; Sadiq I; Nawaz T; Akhtar MN
    G3 (Bethesda); 2019 Aug; 9(8):2749-2760. PubMed ID: 31239292
    [TBL] [Abstract][Full Text] [Related]  

  • 53. Improving bulk RNA-seq classification by transferring gene signature from single cells in acute myeloid leukemia.
    Wang R; Zheng X; Wang J; Wan S; Song F; Wong MH; Leung KS; Cheng L
    Brief Bioinform; 2022 Mar; 23(2):. PubMed ID: 35136933
    [TBL] [Abstract][Full Text] [Related]  

  • 54. Bioinformatics analysis of alternative polyadenylation in green alga Chlamydomonas reinhardtii using transcriptome sequences from three different sequencing platforms.
    Zhao Z; Wu X; Kumar PK; Dong M; Ji G; Li QQ; Liang C
    G3 (Bethesda); 2014 Mar; 4(5):871-83. PubMed ID: 24626288
    [TBL] [Abstract][Full Text] [Related]  

  • 55. Mostly natural sequencing-by-synthesis for scRNA-seq using Ultima sequencing.
    Simmons SK; Lithwick-Yanai G; Adiconis X; Oberstrass F; Iremadze N; Geiger-Schuller K; Thakore PI; Frangieh CJ; Barad O; Almogy G; Rozenblatt-Rosen O; Regev A; Lipson D; Levin JZ
    Nat Biotechnol; 2023 Feb; 41(2):204-211. PubMed ID: 36109685
    [TBL] [Abstract][Full Text] [Related]  

  • 56. Discovery of alternative polyadenylation dynamics from single cell types.
    Ye C; Lin J; Li QQ
    Comput Struct Biotechnol J; 2020; 18():1012-1019. PubMed ID: 32382395
    [TBL] [Abstract][Full Text] [Related]  

  • 57. Systematic identification of functional SNPs interrupting 3'UTR polyadenylation signals.
    Shulman ED; Elkon R
    PLoS Genet; 2020 Aug; 16(8):e1008977. PubMed ID: 32804959
    [TBL] [Abstract][Full Text] [Related]  

  • 58. Dynamic landscape of alternative polyadenylation during retinal development.
    Hu W; Li S; Park JY; Boppana S; Ni T; Li M; Zhu J; Tian B; Xie Z; Xiang M
    Cell Mol Life Sci; 2017 May; 74(9):1721-1739. PubMed ID: 27990575
    [TBL] [Abstract][Full Text] [Related]  

  • 59. A multitask clustering approach for single-cell RNA-seq analysis in Recessive Dystrophic Epidermolysis Bullosa.
    Zhang H; Lee CAA; Li Z; Garbe JR; Eide CR; Petegrosso R; Kuang R; Tolar J
    PLoS Comput Biol; 2018 Apr; 14(4):e1006053. PubMed ID: 29630593
    [TBL] [Abstract][Full Text] [Related]  

  • 60. mountainClimber Identifies Alternative Transcription Start and Polyadenylation Sites in RNA-Seq.
    Cass AA; Xiao X
    Cell Syst; 2019 Oct; 9(4):393-400.e6. PubMed ID: 31542416
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 15.