BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

322 related articles for article (PubMed ID: 36168804)

  • 1. Exploring differential exon usage via short- and long-read RNA sequencing strategies.
    Leshkowitz D; Kedmi M; Fried Y; Pilzer D; Keren-Shaul H; Ainbinder E; Dassa B
    Open Biol; 2022 Sep; 12(9):220206. PubMed ID: 36168804
    [TBL] [Abstract][Full Text] [Related]  

  • 2. PacBio full-length cDNA sequencing integrated with RNA-seq reads drastically improves the discovery of splicing transcripts in rice.
    Zhang G; Sun M; Wang J; Lei M; Li C; Zhao D; Huang J; Li W; Li S; Li J; Yang J; Luo Y; Hu S; Zhang B
    Plant J; 2019 Jan; 97(2):296-305. PubMed ID: 30288819
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Transcriptome profiling of mouse samples using nanopore sequencing of cDNA and RNA molecules.
    Sessegolo C; Cruaud C; Da Silva C; Cologne A; Dubarry M; Derrien T; Lacroix V; Aury JM
    Sci Rep; 2019 Oct; 9(1):14908. PubMed ID: 31624302
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Improving RNA-Seq expression estimation by modeling isoform- and exon-specific read sequencing rate.
    Liu X; Shi X; Chen C; Zhang L
    BMC Bioinformatics; 2015 Oct; 16():332. PubMed ID: 26475308
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Full-length isoform concatenation sequencing to resolve cancer transcriptome complexity.
    Wijeratne S; Gonzalez MEH; Roach K; Miller KE; Schieffer KM; Fitch JR; Leonard J; White P; Kelly BJ; Cottrell CE; Mardis ER; Wilson RK; Miller AR
    BMC Genomics; 2024 Jan; 25(1):122. PubMed ID: 38287261
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Identification of Protein Isoforms Using Reference Databases Built from Long and Short Read RNA-Sequencing.
    Tay AP; Hamey JJ; Martyn GE; Wilson LOW; Wilkins MR
    J Proteome Res; 2022 Jul; 21(7):1628-1639. PubMed ID: 35612954
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Alternative Splicing Signatures in RNA-seq Data: Percent Spliced in (PSI).
    Schafer S; Miao K; Benson CC; Heinig M; Cook SA; Hubner N
    Curr Protoc Hum Genet; 2015 Oct; 87():11.16.1-11.16.14. PubMed ID: 26439713
    [TBL] [Abstract][Full Text] [Related]  

  • 8. RNA sequencing and transcriptome arrays analyses show opposing results for alternative splicing in patient derived samples.
    Nazarov PV; Muller A; Kaoma T; Nicot N; Maximo C; Birembaut P; Tran NL; Dittmar G; Vallar L
    BMC Genomics; 2017 Jun; 18(1):443. PubMed ID: 28587590
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Direct full-length RNA sequencing reveals unexpected transcriptome complexity during
    Li R; Ren X; Ding Q; Bi Y; Xie D; Zhao Z
    Genome Res; 2020 Feb; 30(2):287-298. PubMed ID: 32024662
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Transcriptome profiling analysis of tea plant (Camellia sinensis) using Oxford Nanopore long-read RNA-Seq technology.
    Wang F; Chen Z; Pei H; Guo Z; Wen D; Liu R; Song B
    Gene; 2021 Feb; 769():145247. PubMed ID: 33096183
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Dynamic nanopore long-read sequencing analysis of HIV-1 splicing events during the early steps of infection.
    Nguyen Quang N; Goudey S; Ségéral E; Mohammad A; Lemoine S; Blugeon C; Versapuech M; Paillart JC; Berlioz-Torrent C; Emiliani S; Gallois-Montbrun S
    Retrovirology; 2020 Aug; 17(1):25. PubMed ID: 32807178
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Freddie: annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing.
    Orabi B; Xie N; McConeghy B; Dong X; Chauve C; Hach F
    Nucleic Acids Res; 2023 Jan; 51(2):e11. PubMed ID: 36478271
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Transcript Profiling Using Long-Read Sequencing Technologies.
    Bayega A; Wang YC; Oikonomopoulos S; Djambazian H; Fahiminiya S; Ragoussis J
    Methods Mol Biol; 2018; 1783():121-147. PubMed ID: 29767360
    [TBL] [Abstract][Full Text] [Related]  

  • 14. LIQA: long-read isoform quantification and analysis.
    Hu Y; Fang L; Chen X; Zhong JF; Li M; Wang K
    Genome Biol; 2021 Jun; 22(1):182. PubMed ID: 34140043
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Long read isoform sequencing reveals hidden transcriptional complexity between cattle subspecies.
    Ren Y; Tseng E; Smith TPL; Hiendleder S; Williams JL; Low WY
    BMC Genomics; 2023 Mar; 24(1):108. PubMed ID: 36915055
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A long-read RNA-seq approach to identify novel transcripts of very large genes.
    Uapinyoying P; Goecks J; Knoblach SM; Panchapakesan K; Bonnemann CG; Partridge TA; Jaiswal JK; Hoffman EP
    Genome Res; 2020 Jun; 30(6):885-897. PubMed ID: 32660935
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Inference of isoforms from short sequence reads.
    Feng J; Li W; Jiang T
    J Comput Biol; 2011 Mar; 18(3):305-21. PubMed ID: 21385036
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Identification and quantification of small exon-containing isoforms in long-read RNA sequencing data.
    Liu Z; Zhu C; Steinmetz LM; Wei W
    Nucleic Acids Res; 2023 Nov; 51(20):e104. PubMed ID: 37843096
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Improving nanopore read accuracy with the R2C2 method enables the sequencing of highly multiplexed full-length single-cell cDNA.
    Volden R; Palmer T; Byrne A; Cole C; Schmitz RJ; Green RE; Vollmers C
    Proc Natl Acad Sci U S A; 2018 Sep; 115(39):9726-9731. PubMed ID: 30201725
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Gene expression and splicing alterations analyzed by high throughput RNA sequencing of chronic lymphocytic leukemia specimens.
    Liao W; Jordaan G; Nham P; Phan RT; Pelegrini M; Sharma S
    BMC Cancer; 2015 Oct; 15():714. PubMed ID: 26474785
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 17.