230 related articles for article (PubMed ID: 36169225)
1. ProPan: a comprehensive database for profiling prokaryotic pan-genome dynamics.
Zhang Y; Zhang H; Zhang Z; Qian Q; Zhang Z; Xiao J
Nucleic Acids Res; 2023 Jan; 51(D1):D767-D776. PubMed ID: 36169225
[TBL] [Abstract][Full Text] [Related]
2. PADS Arsenal: a database of prokaryotic defense systems related genes.
Zhang Y; Zhang Z; Zhang H; Zhao Y; Zhang Z; Xiao J
Nucleic Acids Res; 2020 Jan; 48(D1):D590-D598. PubMed ID: 31620779
[TBL] [Abstract][Full Text] [Related]
3. Nutrition or nature: using elementary flux modes to disentangle the complex forces shaping prokaryote pan-genomes.
Garza DR; von Meijenfeldt FAB; van Dijk B; Boleij A; Huynen MA; Dutilh BE
BMC Ecol Evol; 2022 Aug; 22(1):101. PubMed ID: 35974327
[TBL] [Abstract][Full Text] [Related]
4. GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy.
Parks DH; Chuvochina M; Rinke C; Mussig AJ; Chaumeil PA; Hugenholtz P
Nucleic Acids Res; 2022 Jan; 50(D1):D785-D794. PubMed ID: 34520557
[TBL] [Abstract][Full Text] [Related]
5. DoriC 12.0: an updated database of replication origins in both complete and draft prokaryotic genomes.
Dong MJ; Luo H; Gao F
Nucleic Acids Res; 2023 Jan; 51(D1):D117-D120. PubMed ID: 36305822
[TBL] [Abstract][Full Text] [Related]
6. OperomeDB: A Database of Condition-Specific Transcription Units in Prokaryotic Genomes.
Chetal K; Janga SC
Biomed Res Int; 2015; 2015():318217. PubMed ID: 26543854
[TBL] [Abstract][Full Text] [Related]
7. ppsPCP: a plant presence/absence variants scanner and pan-genome construction pipeline.
Tahir Ul Qamar M; Zhu X; Xing F; Chen LL
Bioinformatics; 2019 Oct; 35(20):4156-4158. PubMed ID: 30851098
[TBL] [Abstract][Full Text] [Related]
8. Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2023.
CNCB-NGDC Members and Partners
Nucleic Acids Res; 2023 Jan; 51(D1):D18-D28. PubMed ID: 36420893
[TBL] [Abstract][Full Text] [Related]
9. proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes.
Fullam A; Letunic I; Schmidt TSB; Ducarmon QR; Karcher N; Khedkar S; Kuhn M; Larralde M; Maistrenko OM; Malfertheiner L; Milanese A; Rodrigues JFM; Sanchis-López C; Schudoma C; Szklarczyk D; Sunagawa S; Zeller G; Huerta-Cepas J; von Mering C; Bork P; Mende DR
Nucleic Acids Res; 2023 Jan; 51(D1):D760-D766. PubMed ID: 36408900
[TBL] [Abstract][Full Text] [Related]
10. Pan-genomics of Ochrobactrum species from clinical and environmental origins reveals distinct populations and possible links.
Gohil K; Rajput V; Dharne M
Genomics; 2020 Sep; 112(5):3003-3012. PubMed ID: 32428556
[TBL] [Abstract][Full Text] [Related]
11. Different evolutionary trends form the twilight zone of the bacterial pan-genome.
Horesh G; Taylor-Brown A; McGimpsey S; Lassalle F; Corander J; Heinz E; Thomson NR
Microb Genom; 2021 Sep; 7(9):. PubMed ID: 34559043
[TBL] [Abstract][Full Text] [Related]
12. Genome Properties: a system for the investigation of prokaryotic genetic content for microbiology, genome annotation and comparative genomics.
Haft DH; Selengut JD; Brinkac LM; Zafar N; White O
Bioinformatics; 2005 Feb; 21(3):293-306. PubMed ID: 15347579
[TBL] [Abstract][Full Text] [Related]
13. AnimalMetaOmics: a multi-omics data resources for exploring animal microbial genomes and microbiomes.
Hu R; Li F; Chen Y; Liu C; Li J; Ma Z; Wang Y; Cui C; Luo C; Zhou P; Ni W; Yang QY; Hu S
Nucleic Acids Res; 2024 Jan; 52(D1):D690-D700. PubMed ID: 37897361
[TBL] [Abstract][Full Text] [Related]
14. CompoDynamics: a comprehensive database for characterizing sequence composition dynamics.
Jiang S; Du Q; Feng C; Ma L; Zhang Z
Nucleic Acids Res; 2022 Jan; 50(D1):D962-D969. PubMed ID: 34718745
[TBL] [Abstract][Full Text] [Related]
15. Pan-Genome Analysis of Delftia tsuruhatensis Reveals Important Traits Concerning the Genetic Diversity, Pathogenicity, and Biotechnological Properties of the Species.
Yin Z; Liu X; Qian C; Sun L; Pang S; Liu J; Li W; Huang W; Cui S; Zhang C; Song W; Wang D; Xie Z
Microbiol Spectr; 2022 Apr; 10(2):e0207221. PubMed ID: 35230132
[TBL] [Abstract][Full Text] [Related]
16. The MACADAM database: a MetAboliC pAthways DAtabase for Microbial taxonomic groups for mining potential metabolic capacities of archaeal and bacterial taxonomic groups.
Le Boulch M; Déhais P; Combes S; Pascal G
Database (Oxford); 2019 Jan; 2019():. PubMed ID: 31032842
[TBL] [Abstract][Full Text] [Related]
17. A complete domain-to-species taxonomy for Bacteria and Archaea.
Parks DH; Chuvochina M; Chaumeil PA; Rinke C; Mussig AJ; Hugenholtz P
Nat Biotechnol; 2020 Sep; 38(9):1079-1086. PubMed ID: 32341564
[TBL] [Abstract][Full Text] [Related]
18. Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains.
Kyrpides NC; Hugenholtz P; Eisen JA; Woyke T; Göker M; Parker CT; Amann R; Beck BJ; Chain PS; Chun J; Colwell RR; Danchin A; Dawyndt P; Dedeurwaerdere T; DeLong EF; Detter JC; De Vos P; Donohue TJ; Dong XZ; Ehrlich DS; Fraser C; Gibbs R; Gilbert J; Gilna P; Glöckner FO; Jansson JK; Keasling JD; Knight R; Labeda D; Lapidus A; Lee JS; Li WJ; Ma J; Markowitz V; Moore ER; Morrison M; Meyer F; Nelson KE; Ohkuma M; Ouzounis CA; Pace N; Parkhill J; Qin N; Rossello-Mora R; Sikorski J; Smith D; Sogin M; Stevens R; Stingl U; Suzuki K; Taylor D; Tiedje JM; Tindall B; Wagner M; Weinstock G; Weissenbach J; White O; Wang J; Zhang L; Zhou YG; Field D; Whitman WB; Garrity GM; Klenk HP
PLoS Biol; 2014 Aug; 12(8):e1001920. PubMed ID: 25093819
[TBL] [Abstract][Full Text] [Related]
19. Phylogenomics of prokaryotic ribosomal proteins.
Yutin N; Puigbò P; Koonin EV; Wolf YI
PLoS One; 2012; 7(5):e36972. PubMed ID: 22615861
[TBL] [Abstract][Full Text] [Related]
20.
; ; . PubMed ID:
[No Abstract] [Full Text] [Related]
[Next] [New Search]
