These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
123 related articles for article (PubMed ID: 36197791)
1. Sequencing our way to more accurate community abundance. Brennan GL Mol Ecol Resour; 2023 Jan; 23(1):13-15. PubMed ID: 36197791 [TBL] [Abstract][Full Text] [Related]
2. A robust approach to estimate relative phytoplankton cell abundances from metagenomes. Pierella Karlusich JJ; Pelletier E; Zinger L; Lombard F; Zingone A; Colin S; Gasol JM; Dorrell RG; Henry N; Scalco E; Acinas SG; Wincker P; de Vargas C; Bowler C Mol Ecol Resour; 2023 Jan; 23(1):16-40. PubMed ID: 35108459 [TBL] [Abstract][Full Text] [Related]
3. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach. Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976 [TBL] [Abstract][Full Text] [Related]
4. Practical considerations for sampling and data analysis in contemporary metagenomics-based environmental studies. Staley C; Sadowsky MJ J Microbiol Methods; 2018 Nov; 154():14-18. PubMed ID: 30287354 [TBL] [Abstract][Full Text] [Related]
5. Understanding microbial community diversity metrics derived from metagenomes: performance evaluation using simulated data sets. Bonilla-Rosso G; Eguiarte LE; Romero D; Travisano M; Souza V FEMS Microbiol Ecol; 2012 Oct; 82(1):37-49. PubMed ID: 22554028 [TBL] [Abstract][Full Text] [Related]
6. Incorporating 16S gene copy number information improves estimates of microbial diversity and abundance. Kembel SW; Wu M; Eisen JA; Green JL PLoS Comput Biol; 2012; 8(10):e1002743. PubMed ID: 23133348 [TBL] [Abstract][Full Text] [Related]
7. Metagenome skimming for phylogenetic community ecology: a new era in biodiversity research. Papadopoulou A; Taberlet P; Zinger L Mol Ecol; 2015 Jul; 24(14):3515-7. PubMed ID: 26174127 [TBL] [Abstract][Full Text] [Related]
8. Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets. Portik DM; Brown CT; Pierce-Ward NT BMC Bioinformatics; 2022 Dec; 23(1):541. PubMed ID: 36513983 [TBL] [Abstract][Full Text] [Related]
9. 454 pyrosequencing to describe microbial eukaryotic community composition, diversity and relative abundance: a test for marine haptophytes. Egge E; Bittner L; Andersen T; Audic S; de Vargas C; Edvardsen B PLoS One; 2013; 8(9):e74371. PubMed ID: 24069303 [TBL] [Abstract][Full Text] [Related]
10. Genotype by sequencing: An alternative new method to amplicon metabarcoding and shotgun metagenomics for the assessment of eukaryote biodiversity. Piñol J Mol Ecol Resour; 2021 May; 21(4):1001-1004. PubMed ID: 33423396 [TBL] [Abstract][Full Text] [Related]
11. Intestinal microbiota domination under extreme selective pressures characterized by metagenomic read cloud sequencing and assembly. Kang JB; Siranosian BA; Moss EL; Banaei N; Andermann TM; Bhatt AS BMC Bioinformatics; 2019 Dec; 20(Suppl 16):585. PubMed ID: 31787070 [TBL] [Abstract][Full Text] [Related]
12. Infer Metagenomic Abundance and Reveal Homologous Genomes Based on the Structure of Taxonomy Tree. Qiu YQ; Tian X; Zhang S IEEE/ACM Trans Comput Biol Bioinform; 2015; 12(5):1112-22. PubMed ID: 26451823 [TBL] [Abstract][Full Text] [Related]
13. rpoB, a promising marker for analyzing the diversity of bacterial communities by amplicon sequencing. Ogier JC; Pagès S; Galan M; Barret M; Gaudriault S BMC Microbiol; 2019 Jul; 19(1):171. PubMed ID: 31357928 [TBL] [Abstract][Full Text] [Related]
14. A metagenomic assessment of microbial eukaryotic diversity in the global ocean. Obiol A; Giner CR; Sánchez P; Duarte CM; Acinas SG; Massana R Mol Ecol Resour; 2020 May; 20(3):. PubMed ID: 32065492 [TBL] [Abstract][Full Text] [Related]
15. MetaGeniE: characterizing human clinical samples using deep metagenomic sequencing. Rawat A; Engelthaler DM; Driebe EM; Keim P; Foster JT PLoS One; 2014; 9(11):e110915. PubMed ID: 25365329 [TBL] [Abstract][Full Text] [Related]
16. MinION Sequencing of Yeast Mock Communities To Assess the Effect of Databases and ITS-LSU Markers on the Reliability of Metabarcoding Analysis. Conti A; Casagrande Pierantoni D; Robert V; Corte L; Cardinali G Microbiol Spectr; 2023 Feb; 11(1):e0105222. PubMed ID: 36519933 [TBL] [Abstract][Full Text] [Related]
17. Techniques for quantifying phytoplankton biodiversity. Johnson ZI; Martiny AC Ann Rev Mar Sci; 2015; 7():299-324. PubMed ID: 25251272 [TBL] [Abstract][Full Text] [Related]
18. Random sampling process leads to overestimation of β-diversity of microbial communities. Zhou J; Jiang YH; Deng Y; Shi Z; Zhou BY; Xue K; Wu L; He Z; Yang Y mBio; 2013 Jun; 4(3):e00324-13. PubMed ID: 23760464 [TBL] [Abstract][Full Text] [Related]
19. MetaObtainer: A Tool for Obtaining Specified Species from Metagenomic Reads of Next-generation Sequencing. Pan W; Chen B; Xu Y Interdiscip Sci; 2015 Dec; 7(4):405-13. PubMed ID: 26293485 [TBL] [Abstract][Full Text] [Related]
20. Absolute quantitation of microbes using 16S rRNA gene metabarcoding: A rapid normalization of relative abundances by quantitative PCR targeting a 16S rRNA gene spike-in standard. Zemb O; Achard CS; Hamelin J; De Almeida ML; Gabinaud B; Cauquil L; Verschuren LMG; Godon JJ Microbiologyopen; 2020 Mar; 9(3):e977. PubMed ID: 31927795 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]