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9. Scikit-ribo Enables Accurate Estimation and Robust Modeling of Translation Dynamics at Codon Resolution. Fang H; Huang YF; Radhakrishnan A; Siepel A; Lyon GJ; Schatz MC Cell Syst; 2018 Feb; 6(2):180-191.e4. PubMed ID: 29361467 [TBL] [Abstract][Full Text] [Related]
10. RiboGalaxy: A browser based platform for the alignment, analysis and visualization of ribosome profiling data. Michel AM; Mullan JP; Velayudhan V; O'Connor PB; Donohue CA; Baranov PV RNA Biol; 2016; 13(3):316-9. PubMed ID: 26821742 [TBL] [Abstract][Full Text] [Related]
11. A Ribo-Seq Method to Study Genome-Wide Translational Regulation in Plants. Chen H; Alonso JM; Stepanova AN Methods Mol Biol; 2022; 2494():61-98. PubMed ID: 35467201 [TBL] [Abstract][Full Text] [Related]
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13. Detecting translational regulation by change point analysis of ribosome profiling data sets. Zupanic A; Meplan C; Grellscheid SN; Mathers JC; Kirkwood TB; Hesketh JE; Shanley DP RNA; 2014 Oct; 20(10):1507-18. PubMed ID: 25147239 [TBL] [Abstract][Full Text] [Related]
14. Assessing Ribosome Distribution Along Transcripts with Polarity Scores and Regression Slope Estimates. Vorontsov IE; Egorov AA; Anisimova AS; Eliseeva IA; Makeev VJ; Gladyshev VN; Dmitriev SE; Kulakovskiy IV Methods Mol Biol; 2021; 2252():269-294. PubMed ID: 33765281 [TBL] [Abstract][Full Text] [Related]
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17. Ribosome profiling in plants: what is not lost in translation? Kage U; Powell JJ; Gardiner DM; Kazan K J Exp Bot; 2020 Sep; 71(18):5323-5332. PubMed ID: 32459844 [TBL] [Abstract][Full Text] [Related]
18. RiboToolkit: an integrated platform for analysis and annotation of ribosome profiling data to decode mRNA translation at codon resolution. Liu Q; Shvarts T; Sliz P; Gregory RI Nucleic Acids Res; 2020 Jul; 48(W1):W218-W229. PubMed ID: 32427338 [TBL] [Abstract][Full Text] [Related]
19. Monitoring Cell-Type-Specific Gene Expression Using Ribosome Profiling In Vivo During Cardiac Hemodynamic Stress. Doroudgar S; Hofmann C; Boileau E; Malone B; Riechert E; Gorska AA; Jakobi T; Sandmann C; Jürgensen L; Kmietczyk V; Malovrh E; Burghaus J; Rettel M; Stein F; Younesi F; Friedrich UA; Mauz V; Backs J; Kramer G; Katus HA; Dieterich C; Völkers M Circ Res; 2019 Aug; 125(4):431-448. PubMed ID: 31284834 [TBL] [Abstract][Full Text] [Related]
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