BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

342 related articles for article (PubMed ID: 36243989)

  • 1. PGG.SV: a whole-genome-sequencing-based structural variant resource and data analysis platform.
    Wang Y; Ling Y; Gong J; Zhao X; Zhou H; Xie B; Lou H; Zhuang X; Jin L; ; Fan S; Zhang G; Xu S
    Nucleic Acids Res; 2023 Jan; 51(D1):D1109-D1116. PubMed ID: 36243989
    [TBL] [Abstract][Full Text] [Related]  

  • 2. PGG.Han: the Han Chinese genome database and analysis platform.
    Gao Y; Zhang C; Yuan L; Ling Y; Wang X; Liu C; Pan Y; Zhang X; Ma X; Wang Y; Lu Y; Yuan K; Ye W; Qian J; Chang H; Cao R; Yang X; Ma L; Ju Y; Dai L; Tang Y; ; Zhang G; Xu S
    Nucleic Acids Res; 2020 Jan; 48(D1):D971-D976. PubMed ID: 31584086
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Visualization tools for human structural variations identified by whole-genome sequencing.
    Yokoyama TT; Kasahara M
    J Hum Genet; 2020 Jan; 65(1):49-60. PubMed ID: 31666648
    [TBL] [Abstract][Full Text] [Related]  

  • 4. NPSV: A simulation-driven approach to genotyping structural variants in whole-genome sequencing data.
    Linderman MD; Paudyal C; Shakeel M; Kelley W; Bashir A; Gelb BD
    Gigascience; 2021 Jul; 10(7):. PubMed ID: 34195837
    [TBL] [Abstract][Full Text] [Related]  

  • 5. PGG.MHC: toward understanding the diversity of major histocompatibility complexes in human populations.
    Zhao X; Ma S; Wang B; Jiang X; ; Xu S
    Nucleic Acids Res; 2023 Jan; 51(D1):D1102-D1108. PubMed ID: 36321663
    [TBL] [Abstract][Full Text] [Related]  

  • 6. PGG.Population: a database for understanding the genomic diversity and genetic ancestry of human populations.
    Zhang C; Gao Y; Liu J; Xue Z; Lu Y; Deng L; Tian L; Feng Q; Xu S
    Nucleic Acids Res; 2018 Jan; 46(D1):D984-D993. PubMed ID: 29112749
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Multi-platform discovery of haplotype-resolved structural variation in human genomes.
    Chaisson MJP; Sanders AD; Zhao X; Malhotra A; Porubsky D; Rausch T; Gardner EJ; Rodriguez OL; Guo L; Collins RL; Fan X; Wen J; Handsaker RE; Fairley S; Kronenberg ZN; Kong X; Hormozdiari F; Lee D; Wenger AM; Hastie AR; Antaki D; Anantharaman T; Audano PA; Brand H; Cantsilieris S; Cao H; Cerveira E; Chen C; Chen X; Chin CS; Chong Z; Chuang NT; Lambert CC; Church DM; Clarke L; Farrell A; Flores J; Galeev T; Gorkin DU; Gujral M; Guryev V; Heaton WH; Korlach J; Kumar S; Kwon JY; Lam ET; Lee JE; Lee J; Lee WP; Lee SP; Li S; Marks P; Viaud-Martinez K; Meiers S; Munson KM; Navarro FCP; Nelson BJ; Nodzak C; Noor A; Kyriazopoulou-Panagiotopoulou S; Pang AWC; Qiu Y; Rosanio G; Ryan M; Stütz A; Spierings DCJ; Ward A; Welch AE; Xiao M; Xu W; Zhang C; Zhu Q; Zheng-Bradley X; Lowy E; Yakneen S; McCarroll S; Jun G; Ding L; Koh CL; Ren B; Flicek P; Chen K; Gerstein MB; Kwok PY; Lansdorp PM; Marth GT; Sebat J; Shi X; Bashir A; Ye K; Devine SE; Talkowski ME; Mills RE; Marschall T; Korbel JO; Eichler EE; Lee C
    Nat Commun; 2019 Apr; 10(1):1784. PubMed ID: 30992455
    [TBL] [Abstract][Full Text] [Related]  

  • 8. nanotatoR: a tool for enhanced annotation of genomic structural variants.
    Bhattacharya S; Barseghyan H; Délot EC; Vilain E
    BMC Genomics; 2021 Jan; 22(1):10. PubMed ID: 33407088
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Evaluation of Single-Molecule Sequencing Technologies for Structural Variant Detection in Two Swedish Human Genomes.
    Fatima N; Petri A; Gyllensten U; Feuk L; Ameur A
    Genes (Basel); 2020 Nov; 11(12):. PubMed ID: 33266238
    [TBL] [Abstract][Full Text] [Related]  

  • 10. SVJedi: genotyping structural variations with long reads.
    Lecompte L; Peterlongo P; Lavenier D; Lemaitre C
    Bioinformatics; 2020 Nov; 36(17):4568-4575. PubMed ID: 32437523
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Expectations and blind spots for structural variation detection from long-read assemblies and short-read genome sequencing technologies.
    Zhao X; Collins RL; Lee WP; Weber AM; Jun Y; Zhu Q; Weisburd B; Huang Y; Audano PA; Wang H; Walker M; Lowther C; Fu J; ; Gerstein MB; Devine SE; Marschall T; Korbel JO; Eichler EE; Chaisson MJP; Lee C; Mills RE; Brand H; Talkowski ME
    Am J Hum Genet; 2021 May; 108(5):919-928. PubMed ID: 33789087
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Comparison of structural variants detected by PacBio-CLR and ONT sequencing in pear.
    Liu Y; Zhang M; Wang R; Li B; Jiang Y; Sun M; Chang Y; Wu J
    BMC Genomics; 2022 Dec; 23(1):830. PubMed ID: 36517766
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Assessing structural variation in a personal genome-towards a human reference diploid genome.
    English AC; Salerno WJ; Hampton OA; Gonzaga-Jauregui C; Ambreth S; Ritter DI; Beck CR; Davis CF; Dahdouli M; Ma S; Carroll A; Veeraraghavan N; Bruestle J; Drees B; Hastie A; Lam ET; White S; Mishra P; Wang M; Han Y; Zhang F; Stankiewicz P; Wheeler DA; Reid JG; Muzny DM; Rogers J; Sabo A; Worley KC; Lupski JR; Boerwinkle E; Gibbs RA
    BMC Genomics; 2015 Apr; 16(1):286. PubMed ID: 25886820
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variation detection.
    Canaguier A; Guilbaud R; Denis E; Magdelenat G; Belser C; Istace B; Cruaud C; Wincker P; Le Paslier MC; Faivre-Rampant P; Barbe V
    BMC Genomics; 2022 Apr; 23(1):317. PubMed ID: 35448948
    [TBL] [Abstract][Full Text] [Related]  

  • 15. SVExpress: identifying gene features altered recurrently in expression with nearby structural variant breakpoints.
    Zhang Y; Chen F; Creighton CJ
    BMC Bioinformatics; 2021 Mar; 22(1):135. PubMed ID: 33743584
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Toolkit for automated and rapid discovery of structural variants.
    Soylev A; Kockan C; Hormozdiari F; Alkan C
    Methods; 2017 Oct; 129():3-7. PubMed ID: 28583483
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Comprehensive evaluation of structural variation detection algorithms for whole genome sequencing.
    Kosugi S; Momozawa Y; Liu X; Terao C; Kubo M; Kamatani Y
    Genome Biol; 2019 Jun; 20(1):117. PubMed ID: 31159850
    [TBL] [Abstract][Full Text] [Related]  

  • 18. svclassify: a method to establish benchmark structural variant calls.
    Parikh H; Mohiyuddin M; Lam HY; Iyer H; Chen D; Pratt M; Bartha G; Spies N; Losert W; Zook JM; Salit M
    BMC Genomics; 2016 Jan; 17():64. PubMed ID: 26772178
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Comparison of multiple algorithms to reliably detect structural variants in pears.
    Liu Y; Zhang M; Sun J; Chang W; Sun M; Zhang S; Wu J
    BMC Genomics; 2020 Jan; 21(1):61. PubMed ID: 31959124
    [TBL] [Abstract][Full Text] [Related]  

  • 20. StrVCTVRE: A supervised learning method to predict the pathogenicity of human genome structural variants.
    Sharo AG; Hu Z; Sunyaev SR; Brenner SE
    Am J Hum Genet; 2022 Feb; 109(2):195-209. PubMed ID: 35032432
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 18.