195 related articles for article (PubMed ID: 36250868)
1. Single Nucleotide Polymorphism-Based Real-Time PCR Screening Assay for Rapid Tracking of Bacterial Infection Clusters To Complement Whole-Genome Sequencing Efforts during Outbreak Investigations.
Treffon J; Heppner B; Eismann J; Bothe J; Omengo B; Mellmann A
Microbiol Spectr; 2022 Dec; 10(6):e0303622. PubMed ID: 36250868
[TBL] [Abstract][Full Text] [Related]
2. Amplified fragment length polymorphism and whole genome sequencing: a comparison of methods in the investigation of a nosocomial outbreak with vancomycin resistant enterococci.
Janes VA; Notermans DW; Spijkerman IJB; Visser CE; Jakobs ME; van Houdt R; Willems RJL; de Jong MD; Schultsz C; Matamoros S
Antimicrob Resist Infect Control; 2019; 8():153. PubMed ID: 31572571
[TBL] [Abstract][Full Text] [Related]
3. Tracking a tuberculosis outbreak over 21 years: strain-specific single-nucleotide polymorphism typing combined with targeted whole-genome sequencing.
Stucki D; Ballif M; Bodmer T; Coscolla M; Maurer AM; Droz S; Butz C; Borrell S; Längle C; Feldmann J; Furrer H; Mordasini C; Helbling P; Rieder HL; Egger M; Gagneux S; Fenner L
J Infect Dis; 2015 Apr; 211(8):1306-16. PubMed ID: 25362193
[TBL] [Abstract][Full Text] [Related]
4. Split k-mer analysis compared to cgMLST and SNP-based core genome analysis for detecting transmission of vancomycin-resistant enterococci: results from routine outbreak analyses across different hospitals and hospitals networks in Berlin, Germany.
Maechler F; Weber A; Schwengers O; Schwab F; Denkel L; Behnke M; Gastmeier P; Kola A
Microb Genom; 2023 Jan; 9(1):. PubMed ID: 36748706
[TBL] [Abstract][Full Text] [Related]
5. Folic acid supplementation and malaria susceptibility and severity among people taking antifolate antimalarial drugs in endemic areas.
Crider K; Williams J; Qi YP; Gutman J; Yeung L; Mai C; Finkelstain J; Mehta S; Pons-Duran C; Menéndez C; Moraleda C; Rogers L; Daniels K; Green P
Cochrane Database Syst Rev; 2022 Feb; 2(2022):. PubMed ID: 36321557
[TBL] [Abstract][Full Text] [Related]
6. Evaluation of whole-genome sequencing for outbreak detection of Verotoxigenic Escherichia coli O157:H7 from the Canadian perspective.
Rumore J; Tschetter L; Kearney A; Kandar R; McCormick R; Walker M; Peterson CL; Reimer A; Nadon C
BMC Genomics; 2018 Dec; 19(1):870. PubMed ID: 30514209
[TBL] [Abstract][Full Text] [Related]
7. Multicenter Preparedness Exercise Enables Rapid Development of Cluster-Specific PCR-Based Screening Assays from Bacterial Genomic Data.
Treffon J; Prior K; Dreesman J; Egelkamp R; Flieger A; Middendorf-Bauchart B; Projahn M; Richter A; Schuh E; Harmsen D; Mellmann A
J Clin Microbiol; 2023 Mar; 61(3):e0187322. PubMed ID: 36840589
[TBL] [Abstract][Full Text] [Related]
8. Prospective
Rounds JM; Taylor AJ; Eikmeier D; Nichols MM; Lappi V; Wirth SE; Boxrud DJ; Smith KE; Medus C
Epidemiol Infect; 2020 Jun; 148():e254. PubMed ID: 32539900
[TBL] [Abstract][Full Text] [Related]
9. Whole Genome Sequence Analysis of a Large Isoniazid-Resistant Tuberculosis Outbreak in London: A Retrospective Observational Study.
Casali N; Broda A; Harris SR; Parkhill J; Brown T; Drobniewski F
PLoS Med; 2016 Oct; 13(10):e1002137. PubMed ID: 27701423
[TBL] [Abstract][Full Text] [Related]
10. Whole genome sequencing versus traditional genotyping for investigation of a Mycobacterium tuberculosis outbreak: a longitudinal molecular epidemiological study.
Roetzer A; Diel R; Kohl TA; Rückert C; Nübel U; Blom J; Wirth T; Jaenicke S; Schuback S; Rüsch-Gerdes S; Supply P; Kalinowski J; Niemann S
PLoS Med; 2013; 10(2):e1001387. PubMed ID: 23424287
[TBL] [Abstract][Full Text] [Related]
11. Simultaneous Hospital Outbreaks of New Delhi Metallo-β-Lactamase-Producing
Lo S; Lolom I; Goldstein V; Petitjean M; Rondinaud E; Bunel-Gourdy V; Tran Dinh A; Wicky PH; Ruppé E; d'Humières C; Lucet JC; Armand-Lefèvre L
Microbiol Spectr; 2022 Apr; 10(2):e0228721. PubMed ID: 35311539
[TBL] [Abstract][Full Text] [Related]
12. Characterization of Foodborne Outbreaks of Salmonella enterica Serovar Enteritidis with Whole-Genome Sequencing Single Nucleotide Polymorphism-Based Analysis for Surveillance and Outbreak Detection.
Taylor AJ; Lappi V; Wolfgang WJ; Lapierre P; Palumbo MJ; Medus C; Boxrud D
J Clin Microbiol; 2015 Oct; 53(10):3334-40. PubMed ID: 26269623
[TBL] [Abstract][Full Text] [Related]
13. Development of Candida auris Short Tandem Repeat Typing and Its Application to a Global Collection of Isolates.
de Groot T; Puts Y; Berrio I; Chowdhary A; Meis JF
mBio; 2020 Jan; 11(1):. PubMed ID: 31911492
[No Abstract] [Full Text] [Related]
14. Rapid Identification of Relevant Microbial Strains by Identifying Multiple Marker Single Nucleotide Polymorphisms via Amplicon Sequencing: Epidemic Monkeypox Virus as a Proof of Concept.
Buenestado-Serrano S; Herranz M; Palomino-Cabrera R; Rodríguez-Grande C; Peñas-Utrilla D; Molero-Salinas A; Veintimilla C; Catalán P; Alonso R; Muñoz P; Pérez-Lago L; García de Viedma D
Microbiol Spectr; 2023 Feb; 11(1):e0419622. PubMed ID: 36602352
[TBL] [Abstract][Full Text] [Related]
15. Application of whole genome sequence data in analyzing the molecular epidemiology of Shiga toxin-producing Escherichia coli O157:H7/H.
Yokoyama E; Hirai S; Ishige T; Murakami S
Int J Food Microbiol; 2018 Jan; 264():39-45. PubMed ID: 29107195
[TBL] [Abstract][Full Text] [Related]
16. Assessing the genome level diversity of Listeria monocytogenes from contaminated ice cream and environmental samples linked to a listeriosis outbreak in the United States.
Chen Y; Luo Y; Curry P; Timme R; Melka D; Doyle M; Parish M; Hammack TS; Allard MW; Brown EW; Strain EA
PLoS One; 2017; 12(2):e0171389. PubMed ID: 28166293
[TBL] [Abstract][Full Text] [Related]
17. Whole-genome-based Mycobacterium tuberculosis surveillance: a standardized, portable, and expandable approach.
Kohl TA; Diel R; Harmsen D; Rothgänger J; Walter KM; Merker M; Weniger T; Niemann S
J Clin Microbiol; 2014 Jul; 52(7):2479-86. PubMed ID: 24789177
[TBL] [Abstract][Full Text] [Related]
18. Rapid, comprehensive, and affordable mycobacterial diagnosis with whole-genome sequencing: a prospective study.
Pankhurst LJ; Del Ojo Elias C; Votintseva AA; Walker TM; Cole K; Davies J; Fermont JM; Gascoyne-Binzi DM; Kohl TA; Kong C; Lemaitre N; Niemann S; Paul J; Rogers TR; Roycroft E; Smith EG; Supply P; Tang P; Wilcox MH; Wordsworth S; Wyllie D; Xu L; Crook DW;
Lancet Respir Med; 2016 Jan; 4(1):49-58. PubMed ID: 26669893
[TBL] [Abstract][Full Text] [Related]
19. Whole-Genome Sequencing of Bacterial Pathogens: the Future of Nosocomial Outbreak Analysis.
Quainoo S; Coolen JPM; van Hijum SAFT; Huynen MA; Melchers WJG; van Schaik W; Wertheim HFL
Clin Microbiol Rev; 2017 Oct; 30(4):1015-1063. PubMed ID: 28855266
[TBL] [Abstract][Full Text] [Related]
20. Whole-Genome Sequencing Surveillance and Machine Learning of the Electronic Health Record for Enhanced Healthcare Outbreak Detection.
Sundermann AJ; Chen J; Kumar P; Ayres AM; Cho ST; Ezeonwuka C; Griffith MP; Miller JK; Mustapha MM; Pasculle AW; Saul MI; Shutt KA; Srinivasa V; Waggle K; Snyder DJ; Cooper VS; Van Tyne D; Snyder GM; Marsh JW; Dubrawski A; Roberts MS; Harrison LH
Clin Infect Dis; 2022 Aug; 75(3):476-482. PubMed ID: 34791136
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]