These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

150 related articles for article (PubMed ID: 36260782)

  • 1. Ribonucleic Acid Folding Prediction Based on Iterative Multiscale Simulation.
    Zhang D; Li Y; Zhong Q; Wang A; Weng J; Gong L; Li G
    J Phys Chem Lett; 2022 Oct; 13(42):9957-9966. PubMed ID: 36260782
    [TBL] [Abstract][Full Text] [Related]  

  • 2. RNA Folding Based on 5 Beads Model and Multiscale Simulation.
    Zhang D; Gong L; Weng J; Li Y; Wang A; Li G
    Interdiscip Sci; 2023 Sep; 15(3):393-404. PubMed ID: 37115389
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Adaptively Iterative Multiscale Switching Simulation Strategy and Applications to Protein Folding and Structure Prediction.
    Zhong Q; Li G
    J Phys Chem Lett; 2021 Apr; 12(12):3151-3162. PubMed ID: 33755493
    [TBL] [Abstract][Full Text] [Related]  

  • 4. IsRNA: An Iterative Simulated Reference State Approach to Modeling Correlated Interactions in RNA Folding.
    Zhang D; Chen SJ
    J Chem Theory Comput; 2018 Apr; 14(4):2230-2239. PubMed ID: 29499114
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Multiscale simulation of the interaction of calreticulin-thrombospondin-1 complex with a model membrane microdomain.
    Wang L; Murphy-Ullrich JE; Song Y
    J Biomol Struct Dyn; 2019 Feb; 37(3):811-822. PubMed ID: 29380675
    [TBL] [Abstract][Full Text] [Related]  

  • 6. RNA folding pathways from all-atom simulations with a variationally improved history-dependent bias.
    Lazzeri G; Micheletti C; Pasquali S; Faccioli P
    Biophys J; 2023 Aug; 122(15):3089-3098. PubMed ID: 37355771
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A novel multiscale scheme to accelerate atomistic simulations of bio-macromolecules by adaptively driving coarse-grained coordinates.
    Wu K; Xu S; Wan B; Xiu P; Zhou X
    J Chem Phys; 2020 Mar; 152(11):114115. PubMed ID: 32199430
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Combining coarse-grained protein models with replica-exchange all-atom molecular dynamics.
    Wabik J; Kmiecik S; Gront D; Kouza M; Koliński A
    Int J Mol Sci; 2013 May; 14(5):9893-905. PubMed ID: 23665897
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Molecular dynamics simulations of the dimerization of transmembrane alpha-helices.
    Psachoulia E; Marshall DP; Sansom MS
    Acc Chem Res; 2010 Mar; 43(3):388-96. PubMed ID: 20017540
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Molecular dynamics and quantum mechanics of RNA: conformational and chemical change we can believe in.
    Ditzler MA; Otyepka M; Sponer J; Walter NG
    Acc Chem Res; 2010 Jan; 43(1):40-7. PubMed ID: 19754142
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Recent advances in transferable coarse-grained modeling of proteins.
    Kar P; Feig M
    Adv Protein Chem Struct Biol; 2014; 96():143-80. PubMed ID: 25443957
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A generic force field for protein coarse-grained molecular dynamics simulation.
    Gu J; Bai F; Li H; Wang X
    Int J Mol Sci; 2012 Nov; 13(11):14451-69. PubMed ID: 23203075
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Multiscale design of coarse-grained elastic network-based potentials for the μ opioid receptor.
    Fossépré M; Leherte L; Laaksonen A; Vercauteren DP
    J Mol Model; 2016 Sep; 22(9):227. PubMed ID: 27566318
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Hybrid All-Atom/Coarse-Grained Simulations of Proteins by Direct Coupling of CHARMM and PRIMO Force Fields.
    Kar P; Feig M
    J Chem Theory Comput; 2017 Nov; 13(11):5753-5765. PubMed ID: 28992696
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Enhanced Conformational Sampling with an Adaptive Coarse-Grained Elastic Network Model Using Short-Time All-Atom Molecular Dynamics.
    Kanada R; Terayama K; Tokuhisa A; Matsumoto S; Okuno Y
    J Chem Theory Comput; 2022 Apr; 18(4):2062-2074. PubMed ID: 35325529
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Contrastive Learning of Coarse-Grained Force Fields.
    Ding X; Zhang B
    J Chem Theory Comput; 2022 Oct; 18(10):6334-6344. PubMed ID: 36112935
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Combining optimal control theory and molecular dynamics for protein folding.
    Arkun Y; Gur M
    PLoS One; 2012; 7(1):e29628. PubMed ID: 22238629
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Recent Advances in Coarse-Grained Models for Biomolecules and Their Applications.
    Singh N; Li W
    Int J Mol Sci; 2019 Aug; 20(15):. PubMed ID: 31375023
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Modeling of Three-Dimensional RNA Structures Using SimRNA.
    Wirecki TK; Nithin C; Mukherjee S; Bujnicki JM; Boniecki MJ
    Methods Mol Biol; 2020; 2165():103-125. PubMed ID: 32621221
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Multiscale modeling of cellular actin filaments: from atomistic molecular to coarse-grained dynamics.
    Deriu MA; Shkurti A; Paciello G; Bidone TC; Morbiducci U; Ficarra E; Audenino A; Acquaviva A
    Proteins; 2012 Jun; 80(6):1598-609. PubMed ID: 22411308
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.