These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

114 related articles for article (PubMed ID: 36303791)

  • 21. MetaWRAP-a flexible pipeline for genome-resolved metagenomic data analysis.
    Uritskiy GV; DiRuggiero J; Taylor J
    Microbiome; 2018 Sep; 6(1):158. PubMed ID: 30219103
    [TBL] [Abstract][Full Text] [Related]  

  • 22. METABOLIC: high-throughput profiling of microbial genomes for functional traits, metabolism, biogeochemistry, and community-scale functional networks.
    Zhou Z; Tran PQ; Breister AM; Liu Y; Kieft K; Cowley ES; Karaoz U; Anantharaman K
    Microbiome; 2022 Feb; 10(1):33. PubMed ID: 35172890
    [TBL] [Abstract][Full Text] [Related]  

  • 23. An Integrated Pipeline for Annotation and Visualization of Metagenomic Contigs.
    Dong X; Strous M
    Front Genet; 2019; 10():999. PubMed ID: 31681429
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Nonpareil: a redundancy-based approach to assess the level of coverage in metagenomic datasets.
    Rodriguez-R LM; Konstantinidis KT
    Bioinformatics; 2014 Mar; 30(5):629-35. PubMed ID: 24123672
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Snowball: strain aware gene assembly of metagenomes.
    Gregor I; Schönhuth A; McHardy AC
    Bioinformatics; 2016 Sep; 32(17):i649-i657. PubMed ID: 27587685
    [TBL] [Abstract][Full Text] [Related]  

  • 26. mOTUs: Profiling Taxonomic Composition, Transcriptional Activity and Strain Populations of Microbial Communities.
    Ruscheweyh HJ; Milanese A; Paoli L; Sintsova A; Mende DR; Zeller G; Sunagawa S
    Curr Protoc; 2021 Aug; 1(8):e218. PubMed ID: 34387940
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Sunbeam: an extensible pipeline for analyzing metagenomic sequencing experiments.
    Clarke EL; Taylor LJ; Zhao C; Connell A; Lee JJ; Fett B; Bushman FD; Bittinger K
    Microbiome; 2019 Mar; 7(1):46. PubMed ID: 30902113
    [TBL] [Abstract][Full Text] [Related]  

  • 28. MOCAT2: a metagenomic assembly, annotation and profiling framework.
    Kultima JR; Coelho LP; Forslund K; Huerta-Cepas J; Li SS; Driessen M; Voigt AY; Zeller G; Sunagawa S; Bork P
    Bioinformatics; 2016 Aug; 32(16):2520-3. PubMed ID: 27153620
    [TBL] [Abstract][Full Text] [Related]  

  • 29. MSPminer: abundance-based reconstitution of microbial pan-genomes from shotgun metagenomic data.
    Plaza Oñate F; Le Chatelier E; Almeida M; Cervino ACL; Gauthier F; Magoulès F; Ehrlich SD; Pichaud M
    Bioinformatics; 2019 May; 35(9):1544-1552. PubMed ID: 30252023
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Recovering metagenome-assembled genomes from shotgun metagenomic sequencing data: Methods, applications, challenges, and opportunities.
    Zhou Y; Liu M; Yang J
    Microbiol Res; 2022 Jul; 260():127023. PubMed ID: 35430490
    [TBL] [Abstract][Full Text] [Related]  

  • 31. phyloFlash: Rapid Small-Subunit rRNA Profiling and Targeted Assembly from Metagenomes.
    Gruber-Vodicka HR; Seah BKB; Pruesse E
    mSystems; 2020 Oct; 5(5):. PubMed ID: 33109753
    [TBL] [Abstract][Full Text] [Related]  

  • 32. MetaBCC-LR: metagenomics binning by coverage and composition for long reads.
    Wickramarachchi A; Mallawaarachchi V; Rajan V; Lin Y
    Bioinformatics; 2020 Jul; 36(Suppl_1):i3-i11. PubMed ID: 32657364
    [TBL] [Abstract][Full Text] [Related]  

  • 33. HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps.
    Du Y; Sun F
    Genome Biol; 2022 Feb; 23(1):63. PubMed ID: 35227283
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Bakta: rapid and standardized annotation of bacterial genomes via alignment-free sequence identification.
    Schwengers O; Jelonek L; Dieckmann MA; Beyvers S; Blom J; Goesmann A
    Microb Genom; 2021 Nov; 7(11):. PubMed ID: 34739369
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Metagenomics workflow for hybrid assembly, differential coverage binning, metatranscriptomics and pathway analysis (MUFFIN).
    Van Damme R; Hölzer M; Viehweger A; Müller B; Bongcam-Rudloff E; Brandt C
    PLoS Comput Biol; 2021 Feb; 17(2):e1008716. PubMed ID: 33561126
    [TBL] [Abstract][Full Text] [Related]  

  • 36. MIntO: A Modular and Scalable Pipeline For Microbiome Metagenomic and Metatranscriptomic Data Integration.
    Saenz C; Nigro E; Gunalan V; Arumugam M
    Front Bioinform; 2022; 2():846922. PubMed ID: 36304282
    [TBL] [Abstract][Full Text] [Related]  

  • 37. CAMAMED: a pipeline for composition-aware mapping-based analysis of metagenomic data.
    Norouzi-Beirami MH; Marashi SA; Banaei-Moghaddam AM; Kavousi K
    NAR Genom Bioinform; 2021 Mar; 3(1):lqaa107. PubMed ID: 33575649
    [TBL] [Abstract][Full Text] [Related]  

  • 38. GenCoF: a graphical user interface to rapidly remove human genome contaminants from metagenomic datasets.
    Czajkowski MD; Vance DP; Frese SA; Casaburi G
    Bioinformatics; 2019 Jul; 35(13):2318-2319. PubMed ID: 30475995
    [TBL] [Abstract][Full Text] [Related]  

  • 39. DiTing: A Pipeline to Infer and Compare Biogeochemical Pathways From Metagenomic and Metatranscriptomic Data.
    Xue CX; Lin H; Zhu XY; Liu J; Zhang Y; Rowley G; Todd JD; Li M; Zhang XH
    Front Microbiol; 2021; 12():698286. PubMed ID: 34408730
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Complementary Metagenomic Approaches Improve Reconstruction of Microbial Diversity in a Forest Soil.
    Alteio LV; Schulz F; Seshadri R; Varghese N; Rodriguez-Reillo W; Ryan E; Goudeau D; Eichorst SA; Malmstrom RR; Bowers RM; Katz LA; Blanchard JL; Woyke T
    mSystems; 2020 Mar; 5(2):. PubMed ID: 32156798
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 6.