These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

190 related articles for article (PubMed ID: 36304282)

  • 1. MIntO: A Modular and Scalable Pipeline For Microbiome Metagenomic and Metatranscriptomic Data Integration.
    Saenz C; Nigro E; Gunalan V; Arumugam M
    Front Bioinform; 2022; 2():846922. PubMed ID: 36304282
    [TBL] [Abstract][Full Text] [Related]  

  • 2. MetaGT: A pipeline for
    Shafranskaya D; Kale V; Finn R; Lapidus AL; Korobeynikov A; Prjibelski AD
    Front Microbiol; 2022; 13():981458. PubMed ID: 36386613
    [TBL] [Abstract][Full Text] [Related]  

  • 3. MetaQUBIC: a computational pipeline for gene-level functional profiling of metagenome and metatranscriptome.
    Ma A; Sun M; McDermaid A; Liu B; Ma Q
    Bioinformatics; 2019 Nov; 35(21):4474-4477. PubMed ID: 31116375
    [TBL] [Abstract][Full Text] [Related]  

  • 4. IMP: a pipeline for reproducible reference-independent integrated metagenomic and metatranscriptomic analyses.
    Narayanasamy S; Jarosz Y; Muller EE; Heintz-Buschart A; Herold M; Kaysen A; Laczny CC; Pinel N; May P; Wilmes P
    Genome Biol; 2016 Dec; 17(1):260. PubMed ID: 27986083
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Metatranscriptomic analysis of diverse microbial communities reveals core metabolic pathways and microbiome-specific functionality.
    Jiang Y; Xiong X; Danska J; Parkinson J
    Microbiome; 2016 Jan; 4():2. PubMed ID: 26757703
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Intraintestinal Analysis of the Functional Activity of Microbiomes and Its Application to the Common Marmoset Intestine.
    Uehara M; Inoue T; Kominato M; Hase S; Sasaki E; Toyoda A; Sakakibara Y
    mSystems; 2022 Oct; 7(5):e0052022. PubMed ID: 36005400
    [TBL] [Abstract][Full Text] [Related]  

  • 7. gNOMO2: a comprehensive and modular pipeline for integrated multi-omics analyses of microbiomes.
    Arikan M; Muth T
    Gigascience; 2024 Jan; 13():. PubMed ID: 38995144
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Bioinformatics tools for quantitative and functional metagenome and metatranscriptome data analysis in microbes.
    Niu SY; Yang J; McDermaid A; Zhao J; Kang Y; Ma Q
    Brief Bioinform; 2018 Nov; 19(6):1415-1429. PubMed ID: 28481971
    [TBL] [Abstract][Full Text] [Related]  

  • 9. METABOLIC: high-throughput profiling of microbial genomes for functional traits, metabolism, biogeochemistry, and community-scale functional networks.
    Zhou Z; Tran PQ; Breister AM; Liu Y; Kieft K; Cowley ES; Karaoz U; Anantharaman K
    Microbiome; 2022 Feb; 10(1):33. PubMed ID: 35172890
    [TBL] [Abstract][Full Text] [Related]  

  • 10. MetaLAFFA: a flexible, end-to-end, distributed computing-compatible metagenomic functional annotation pipeline.
    Eng A; Verster AJ; Borenstein E
    BMC Bioinformatics; 2020 Oct; 21(1):471. PubMed ID: 33087062
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Functional dynamics of bacterial species in the mouse gut microbiome revealed by metagenomic and metatranscriptomic analyses.
    Chung YW; Gwak HJ; Moon S; Rho M; Ryu JH
    PLoS One; 2020; 15(1):e0227886. PubMed ID: 31978162
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A multi-source domain annotation pipeline for quantitative metagenomic and metatranscriptomic functional profiling.
    Ugarte A; Vicedomini R; Bernardes J; Carbone A
    Microbiome; 2018 Aug; 6(1):149. PubMed ID: 30153857
    [TBL] [Abstract][Full Text] [Related]  

  • 13. MetaPro: a scalable and reproducible data processing and analysis pipeline for metatranscriptomic investigation of microbial communities.
    Taj B; Adeolu M; Xiong X; Ang J; Nursimulu N; Parkinson J
    Microbiome; 2023 Jun; 11(1):143. PubMed ID: 37370188
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Integrative meta-omics in Galaxy and beyond.
    Schiml VC; Delogu F; Kumar P; Kunath B; Batut B; Mehta S; Johnson JE; Grüning B; Pope PB; Jagtap PD; Griffin TJ; Arntzen MØ
    Environ Microbiome; 2023 Jul; 18(1):56. PubMed ID: 37420292
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Functional Profiling of Unfamiliar Microbial Communities Using a Validated De Novo Assembly Metatranscriptome Pipeline.
    Davids M; Hugenholtz F; Martins dos Santos V; Smidt H; Kleerebezem M; Schaap PJ
    PLoS One; 2016; 11(1):e0146423. PubMed ID: 26756338
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Metatranscriptomics: A Tool for Clinical Metagenomics.
    Tyagi S; Katara P
    OMICS; 2024 Jul; ():. PubMed ID: 39029911
    [TBL] [Abstract][Full Text] [Related]  

  • 17. SAMSA: a comprehensive metatranscriptome analysis pipeline.
    Westreich ST; Korf I; Mills DA; Lemay DG
    BMC Bioinformatics; 2016 Sep; 17(1):399. PubMed ID: 27687690
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Use of internal standards for quantitative metatranscriptome and metagenome analysis.
    Satinsky BM; Gifford SM; Crump BC; Moran MA
    Methods Enzymol; 2013; 531():237-50. PubMed ID: 24060124
    [TBL] [Abstract][Full Text] [Related]  

  • 19. COGNIZER: A Framework for Functional Annotation of Metagenomic Datasets.
    Bose T; Haque MM; Reddy C; Mande SS
    PLoS One; 2015; 10(11):e0142102. PubMed ID: 26561344
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Gene finding in metatranscriptomic sequences.
    Ismail WM; Ye Y; Tang H
    BMC Bioinformatics; 2014; 15 Suppl 9(Suppl 9):S8. PubMed ID: 25253067
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.