256 related articles for article (PubMed ID: 36323370)
1. Improvement of large copy number variant detection by whole genome nanopore sequencing.
Cuenca-Guardiola J; de la Morena-Barrio B; García JL; Sanchis-Juan A; Corral J; Fernández-Breis JT
J Adv Res; 2023 Aug; 50():145-158. PubMed ID: 36323370
[TBL] [Abstract][Full Text] [Related]
2. Structural variants identified by Oxford Nanopore PromethION sequencing of the human genome.
De Coster W; De Rijk P; De Roeck A; De Pooter T; D'Hert S; Strazisar M; Sleegers K; Van Broeckhoven C
Genome Res; 2019 Jul; 29(7):1178-1187. PubMed ID: 31186302
[TBL] [Abstract][Full Text] [Related]
3. NanoVar: accurate characterization of patients' genomic structural variants using low-depth nanopore sequencing.
Tham CY; Tirado-Magallanes R; Goh Y; Fullwood MJ; Koh BTH; Wang W; Ng CH; Chng WJ; Thiery A; Tenen DG; Benoukraf T
Genome Biol; 2020 Mar; 21(1):56. PubMed ID: 32127024
[TBL] [Abstract][Full Text] [Related]
4. Comparison of structural variants detected by PacBio-CLR and ONT sequencing in pear.
Liu Y; Zhang M; Wang R; Li B; Jiang Y; Sun M; Chang Y; Wu J
BMC Genomics; 2022 Dec; 23(1):830. PubMed ID: 36517766
[TBL] [Abstract][Full Text] [Related]
5. Short and long-read genome sequencing methodologies for somatic variant detection; genomic analysis of a patient with diffuse large B-cell lymphoma.
Roberts HE; Lopopolo M; Pagnamenta AT; Sharma E; Parkes D; Lonie L; Freeman C; Knight SJL; Lunter G; Dreau H; Lockstone H; Taylor JC; Schuh A; Bowden R; Buck D
Sci Rep; 2021 Mar; 11(1):6408. PubMed ID: 33742045
[TBL] [Abstract][Full Text] [Related]
6. Benchmarking long-read genome sequence alignment tools for human genomics applications.
LoTempio J; Delot E; Vilain E
PeerJ; 2023; 11():e16515. PubMed ID: 38130927
[TBL] [Abstract][Full Text] [Related]
7. Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads.
Shafin K; Pesout T; Chang PC; Nattestad M; Kolesnikov A; Goel S; Baid G; Kolmogorov M; Eizenga JM; Miga KH; Carnevali P; Jain M; Carroll A; Paten B
Nat Methods; 2021 Nov; 18(11):1322-1332. PubMed ID: 34725481
[TBL] [Abstract][Full Text] [Related]
8. NanoSNP: a progressive and haplotype-aware SNP caller on low-coverage nanopore sequencing data.
Huang N; Xu M; Nie F; Ni P; Xiao CL; Luo F; Wang J
Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36548365
[TBL] [Abstract][Full Text] [Related]
9. Sensitive alignment using paralogous sequence variants improves long-read mapping and variant calling in segmental duplications.
Prodanov T; Bansal V
Nucleic Acids Res; 2020 Nov; 48(19):e114. PubMed ID: 33035301
[TBL] [Abstract][Full Text] [Related]
10. Combined use of Oxford Nanopore and Illumina sequencing yields insights into soybean structural variation biology.
Lemay MA; Sibbesen JA; Torkamaneh D; Hamel J; Levesque RC; Belzile F
BMC Biol; 2022 Feb; 20(1):53. PubMed ID: 35197050
[TBL] [Abstract][Full Text] [Related]
11. Implementation of Nanopore sequencing as a pragmatic workflow for copy number variant confirmation in the clinic.
Greer SU; Botello J; Hongo D; Levy B; Shah P; Rabinowitz M; Miller DE; Im K; Kumar A
J Transl Med; 2023 Jun; 21(1):378. PubMed ID: 37301971
[TBL] [Abstract][Full Text] [Related]
12. SVIM: structural variant identification using mapped long reads.
Heller D; Vingron M
Bioinformatics; 2019 Sep; 35(17):2907-2915. PubMed ID: 30668829
[TBL] [Abstract][Full Text] [Related]
13. Evaluating nanopore sequencing data processing pipelines for structural variation identification.
Zhou A; Lin T; Xing J
Genome Biol; 2019 Nov; 20(1):237. PubMed ID: 31727126
[TBL] [Abstract][Full Text] [Related]
14. HQAlign: aligning nanopore reads for SV detection using current-level modeling.
Joshi D; Diggavi S; Chaisson MJP; Kannan S
Bioinformatics; 2023 Oct; 39(10):. PubMed ID: 37738608
[TBL] [Abstract][Full Text] [Related]
15. Vulcan: Improved long-read mapping and structural variant calling via dual-mode alignment.
Fu Y; Mahmoud M; Muraliraman VV; Sedlazeck FJ; Treangen TJ
Gigascience; 2021 Sep; 10(9):. PubMed ID: 34561697
[TBL] [Abstract][Full Text] [Related]
16. Adaptation of Oxford Nanopore technology for hepatitis C whole genome sequencing and identification of within-host viral variants.
Riaz N; Leung P; Barton K; Smith MA; Carswell S; Bull R; Lloyd AR; Rodrigo C
BMC Genomics; 2021 Mar; 22(1):148. PubMed ID: 33653280
[TBL] [Abstract][Full Text] [Related]
17. Are we there yet? Benchmarking low-coverage nanopore long-read sequencing for the assembling of mitochondrial genomes using the vulnerable silky shark Carcharhinus falciformis.
Baeza JA; García-De León FJ
BMC Genomics; 2022 Apr; 23(1):320. PubMed ID: 35459089
[TBL] [Abstract][Full Text] [Related]
18. NPGREAT: assembly of human subtelomere regions with the use of ultralong nanopore reads and linked-reads.
Adam E; Ranjan D; Riethman H
BMC Bioinformatics; 2022 Dec; 23(1):545. PubMed ID: 36526983
[TBL] [Abstract][Full Text] [Related]
19. ECNano: A cost-effective workflow for target enrichment sequencing and accurate variant calling on 4800 clinically significant genes using a single MinION flowcell.
Leung AW; Leung HC; Wong CL; Zheng ZX; Lui WW; Luk HM; Lo IF; Luo R; Lam TW
BMC Med Genomics; 2022 Mar; 15(1):43. PubMed ID: 35246132
[TBL] [Abstract][Full Text] [Related]
20. Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies.
Talsania K; Shen TW; Chen X; Jaeger E; Li Z; Chen Z; Chen W; Tran B; Kusko R; Wang L; Pang AWC; Yang Z; Choudhari S; Colgan M; Fang LT; Carroll A; Shetty J; Kriga Y; German O; Smirnova T; Liu T; Li J; Kellman B; Hong K; Hastie AR; Natarajan A; Moshrefi A; Granat A; Truong T; Bombardi R; Mankinen V; Meerzaman D; Mason CE; Collins J; Stahlberg E; Xiao C; Wang C; Xiao W; Zhao Y
Genome Biol; 2022 Dec; 23(1):255. PubMed ID: 36514120
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]