BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

256 related articles for article (PubMed ID: 36323370)

  • 1. Improvement of large copy number variant detection by whole genome nanopore sequencing.
    Cuenca-Guardiola J; de la Morena-Barrio B; García JL; Sanchis-Juan A; Corral J; Fernández-Breis JT
    J Adv Res; 2023 Aug; 50():145-158. PubMed ID: 36323370
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Structural variants identified by Oxford Nanopore PromethION sequencing of the human genome.
    De Coster W; De Rijk P; De Roeck A; De Pooter T; D'Hert S; Strazisar M; Sleegers K; Van Broeckhoven C
    Genome Res; 2019 Jul; 29(7):1178-1187. PubMed ID: 31186302
    [TBL] [Abstract][Full Text] [Related]  

  • 3. NanoVar: accurate characterization of patients' genomic structural variants using low-depth nanopore sequencing.
    Tham CY; Tirado-Magallanes R; Goh Y; Fullwood MJ; Koh BTH; Wang W; Ng CH; Chng WJ; Thiery A; Tenen DG; Benoukraf T
    Genome Biol; 2020 Mar; 21(1):56. PubMed ID: 32127024
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Comparison of structural variants detected by PacBio-CLR and ONT sequencing in pear.
    Liu Y; Zhang M; Wang R; Li B; Jiang Y; Sun M; Chang Y; Wu J
    BMC Genomics; 2022 Dec; 23(1):830. PubMed ID: 36517766
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Short and long-read genome sequencing methodologies for somatic variant detection; genomic analysis of a patient with diffuse large B-cell lymphoma.
    Roberts HE; Lopopolo M; Pagnamenta AT; Sharma E; Parkes D; Lonie L; Freeman C; Knight SJL; Lunter G; Dreau H; Lockstone H; Taylor JC; Schuh A; Bowden R; Buck D
    Sci Rep; 2021 Mar; 11(1):6408. PubMed ID: 33742045
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Benchmarking long-read genome sequence alignment tools for human genomics applications.
    LoTempio J; Delot E; Vilain E
    PeerJ; 2023; 11():e16515. PubMed ID: 38130927
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads.
    Shafin K; Pesout T; Chang PC; Nattestad M; Kolesnikov A; Goel S; Baid G; Kolmogorov M; Eizenga JM; Miga KH; Carnevali P; Jain M; Carroll A; Paten B
    Nat Methods; 2021 Nov; 18(11):1322-1332. PubMed ID: 34725481
    [TBL] [Abstract][Full Text] [Related]  

  • 8. NanoSNP: a progressive and haplotype-aware SNP caller on low-coverage nanopore sequencing data.
    Huang N; Xu M; Nie F; Ni P; Xiao CL; Luo F; Wang J
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36548365
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Sensitive alignment using paralogous sequence variants improves long-read mapping and variant calling in segmental duplications.
    Prodanov T; Bansal V
    Nucleic Acids Res; 2020 Nov; 48(19):e114. PubMed ID: 33035301
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Combined use of Oxford Nanopore and Illumina sequencing yields insights into soybean structural variation biology.
    Lemay MA; Sibbesen JA; Torkamaneh D; Hamel J; Levesque RC; Belzile F
    BMC Biol; 2022 Feb; 20(1):53. PubMed ID: 35197050
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Implementation of Nanopore sequencing as a pragmatic workflow for copy number variant confirmation in the clinic.
    Greer SU; Botello J; Hongo D; Levy B; Shah P; Rabinowitz M; Miller DE; Im K; Kumar A
    J Transl Med; 2023 Jun; 21(1):378. PubMed ID: 37301971
    [TBL] [Abstract][Full Text] [Related]  

  • 12. SVIM: structural variant identification using mapped long reads.
    Heller D; Vingron M
    Bioinformatics; 2019 Sep; 35(17):2907-2915. PubMed ID: 30668829
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Evaluating nanopore sequencing data processing pipelines for structural variation identification.
    Zhou A; Lin T; Xing J
    Genome Biol; 2019 Nov; 20(1):237. PubMed ID: 31727126
    [TBL] [Abstract][Full Text] [Related]  

  • 14. HQAlign: aligning nanopore reads for SV detection using current-level modeling.
    Joshi D; Diggavi S; Chaisson MJP; Kannan S
    Bioinformatics; 2023 Oct; 39(10):. PubMed ID: 37738608
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Vulcan: Improved long-read mapping and structural variant calling via dual-mode alignment.
    Fu Y; Mahmoud M; Muraliraman VV; Sedlazeck FJ; Treangen TJ
    Gigascience; 2021 Sep; 10(9):. PubMed ID: 34561697
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Adaptation of Oxford Nanopore technology for hepatitis C whole genome sequencing and identification of within-host viral variants.
    Riaz N; Leung P; Barton K; Smith MA; Carswell S; Bull R; Lloyd AR; Rodrigo C
    BMC Genomics; 2021 Mar; 22(1):148. PubMed ID: 33653280
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Are we there yet? Benchmarking low-coverage nanopore long-read sequencing for the assembling of mitochondrial genomes using the vulnerable silky shark Carcharhinus falciformis.
    Baeza JA; García-De León FJ
    BMC Genomics; 2022 Apr; 23(1):320. PubMed ID: 35459089
    [TBL] [Abstract][Full Text] [Related]  

  • 18. NPGREAT: assembly of human subtelomere regions with the use of ultralong nanopore reads and linked-reads.
    Adam E; Ranjan D; Riethman H
    BMC Bioinformatics; 2022 Dec; 23(1):545. PubMed ID: 36526983
    [TBL] [Abstract][Full Text] [Related]  

  • 19. ECNano: A cost-effective workflow for target enrichment sequencing and accurate variant calling on 4800 clinically significant genes using a single MinION flowcell.
    Leung AW; Leung HC; Wong CL; Zheng ZX; Lui WW; Luk HM; Lo IF; Luo R; Lam TW
    BMC Med Genomics; 2022 Mar; 15(1):43. PubMed ID: 35246132
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies.
    Talsania K; Shen TW; Chen X; Jaeger E; Li Z; Chen Z; Chen W; Tran B; Kusko R; Wang L; Pang AWC; Yang Z; Choudhari S; Colgan M; Fang LT; Carroll A; Shetty J; Kriga Y; German O; Smirnova T; Liu T; Li J; Kellman B; Hong K; Hastie AR; Natarajan A; Moshrefi A; Granat A; Truong T; Bombardi R; Mankinen V; Meerzaman D; Mason CE; Collins J; Stahlberg E; Xiao C; Wang C; Xiao W; Zhao Y
    Genome Biol; 2022 Dec; 23(1):255. PubMed ID: 36514120
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.