BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

157 related articles for article (PubMed ID: 36326442)

  • 1. Global FDR control across multiple RNAseq experiments.
    Liou L; Hornburg M; Robertson DS
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36326442
    [TBL] [Abstract][Full Text] [Related]  

  • 2. onlineFDR: an R package to control the false discovery rate for growing data repositories.
    Robertson DS; Wildenhain J; Javanmard A; Karp NA
    Bioinformatics; 2019 Oct; 35(20):4196-4199. PubMed ID: 30873526
    [TBL] [Abstract][Full Text] [Related]  

  • 3. cit: hypothesis testing software for mediation analysis in genomic applications.
    Millstein J; Chen GK; Breton CV
    Bioinformatics; 2016 Aug; 32(15):2364-5. PubMed ID: 27153715
    [TBL] [Abstract][Full Text] [Related]  

  • 4. twilight; a Bioconductor package for estimating the local false discovery rate.
    Scheid S; Spang R
    Bioinformatics; 2005 Jun; 21(12):2921-2. PubMed ID: 15817688
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Better diagnostic signatures from RNAseq data through use of auxiliary co-data.
    Novianti PW; Snoek BC; Wilting SM; van de Wiel MA
    Bioinformatics; 2017 May; 33(10):1572-1574. PubMed ID: 28073760
    [TBL] [Abstract][Full Text] [Related]  

  • 6. schex avoids overplotting for large single-cell RNA-sequencing datasets.
    Freytag S; Lister R
    Bioinformatics; 2020 Apr; 36(7):2291-2292. PubMed ID: 31794001
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Sample size calculation while controlling false discovery rate for differential expression analysis with RNA-sequencing experiments.
    Bi R; Liu P
    BMC Bioinformatics; 2016 Mar; 17():146. PubMed ID: 27029470
    [TBL] [Abstract][Full Text] [Related]  

  • 8. RNASeqGUI: a GUI for analysing RNA-Seq data.
    Russo F; Angelini C
    Bioinformatics; 2014 Sep; 30(17):2514-6. PubMed ID: 24812338
    [TBL] [Abstract][Full Text] [Related]  

  • 9. The RNASeq-er API-a gateway to systematically updated analysis of public RNA-seq data.
    Petryszak R; Fonseca NA; Füllgrabe A; Huerta L; Keays M; Tang YA; Brazma A
    Bioinformatics; 2017 Jul; 33(14):2218-2220. PubMed ID: 28369191
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Powerful and interpretable control of false discoveries in two-group differential expression studies.
    Enjalbert-Courrech N; Neuvial P
    Bioinformatics; 2022 Nov; 38(23):5214-5221. PubMed ID: 36264124
    [TBL] [Abstract][Full Text] [Related]  

  • 11. ANAQUIN: a software toolkit for the analysis of spike-in controls for next generation sequencing.
    Wong T; Deveson IW; Hardwick SA; Mercer TR
    Bioinformatics; 2017 Jun; 33(11):1723-1724. PubMed ID: 28130232
    [TBL] [Abstract][Full Text] [Related]  

  • 12. SimSeq: a nonparametric approach to simulation of RNA-sequence datasets.
    Benidt S; Nettleton D
    Bioinformatics; 2015 Jul; 31(13):2131-40. PubMed ID: 25725090
    [TBL] [Abstract][Full Text] [Related]  

  • 13. fdrci: FDR confidence interval selection and adjustment for large-scale hypothesis testing.
    Millstein J; Battaglin F; Arai H; Zhang W; Jayachandran P; Soni S; Parikh AR; Mancao C; Lenz HJ
    Bioinform Adv; 2022; 2(1):vbac047. PubMed ID: 35747247
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Genefu: an R/Bioconductor package for computation of gene expression-based signatures in breast cancer.
    Gendoo DM; Ratanasirigulchai N; Schröder MS; Paré L; Parker JS; Prat A; Haibe-Kains B
    Bioinformatics; 2016 Apr; 32(7):1097-9. PubMed ID: 26607490
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A classification approach for DNA methylation profiling with bisulfite next-generation sequencing data.
    Cheng L; Zhu Y
    Bioinformatics; 2014 Jan; 30(2):172-9. PubMed ID: 24273245
    [TBL] [Abstract][Full Text] [Related]  

  • 16. SeqBox: RNAseq/ChIPseq reproducible analysis on a consumer game computer.
    Beccuti M; Cordero F; Arigoni M; Panero R; Amparore EG; Donatelli S; Calogero RA
    Bioinformatics; 2018 Mar; 34(5):871-872. PubMed ID: 29069297
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Knockoff boosted tree for model-free variable selection.
    Jiang T; Li Y; Motsinger-Reif AA
    Bioinformatics; 2021 May; 37(7):976-983. PubMed ID: 32966559
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Polyester: simulating RNA-seq datasets with differential transcript expression.
    Frazee AC; Jaffe AE; Langmead B; Leek JT
    Bioinformatics; 2015 Sep; 31(17):2778-84. PubMed ID: 25926345
    [TBL] [Abstract][Full Text] [Related]  

  • 19. MultiRNAflow: integrated analysis of temporal RNA-seq data with multiple biological conditions.
    Loubaton R; Champagnat N; Vallois P; Vallat L
    Bioinformatics; 2024 May; 40(5):. PubMed ID: 38810104
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Combining multiple tools outperforms individual methods in gene set enrichment analyses.
    Alhamdoosh M; Ng M; Wilson NJ; Sheridan JM; Huynh H; Wilson MJ; Ritchie ME
    Bioinformatics; 2017 Feb; 33(3):414-424. PubMed ID: 27694195
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.