122 related articles for article (PubMed ID: 36326605)
1. Representing Catalytic Mechanisms with Rule Composition.
Andersen JL; Fagerberg R; Flamm C; Fontana W; Kolčák J; Laurent CVFP; Merkle D; Nøjgaard N
J Chem Inf Model; 2022 Nov; 62(22):5513-5524. PubMed ID: 36326605
[TBL] [Abstract][Full Text] [Related]
2. Graph transformation for enzymatic mechanisms.
Andersen JL; Fagerberg R; Flamm C; Fontana W; Kolčák J; Laurent CVFP; Merkle D; Nøjgaard N
Bioinformatics; 2021 Jul; 37(Suppl_1):i392-i400. PubMed ID: 34252947
[TBL] [Abstract][Full Text] [Related]
3. RMechDB: A Public Database of Elementary Radical Reaction Steps.
Tavakoli M; Chiu YTT; Baldi P; Carlton AM; Van Vranken D
J Chem Inf Model; 2023 Feb; 63(4):1114-1123. PubMed ID: 36799778
[TBL] [Abstract][Full Text] [Related]
4. PMechDB: A Public Database of Elementary Polar Reaction Steps.
Tavakoli M; Miller RJ; Angel MC; Pfeiffer MA; Gutman ES; Mood AD; Van Vranken D; Baldi P
J Chem Inf Model; 2024 Mar; 64(6):1975-1983. PubMed ID: 38483315
[TBL] [Abstract][Full Text] [Related]
5. Atom mapping with constraint programming.
Mann M; Nahar F; Schnorr N; Backofen R; Stadler PF; Flamm C
Algorithms Mol Biol; 2014; 9(1):23. PubMed ID: 25484913
[TBL] [Abstract][Full Text] [Related]
6. Identification of reaction organization patterns that naturally cluster enzymatic transformations.
Vazquez-Hernandez C; Loza A; Peguero-Sanchez E; Segovia L; Gutierrez-Rios RM
BMC Syst Biol; 2018 May; 12(1):63. PubMed ID: 29848336
[TBL] [Abstract][Full Text] [Related]
7. Curating a comprehensive set of enzymatic reaction rules for efficient novel biosynthetic pathway design.
Ni Z; Stine AE; Tyo KEJ; Broadbelt LJ
Metab Eng; 2021 May; 65():79-87. PubMed ID: 33662575
[TBL] [Abstract][Full Text] [Related]
8. Heuristics-Guided Exploration of Reaction Mechanisms.
Bergeler M; Simm GN; Proppe J; Reiher M
J Chem Theory Comput; 2015 Dec; 11(12):5712-22. PubMed ID: 26642988
[TBL] [Abstract][Full Text] [Related]
9. Enzymatic transition states and transition state analog design.
Schramm VL
Annu Rev Biochem; 1998; 67():693-720. PubMed ID: 9759501
[TBL] [Abstract][Full Text] [Related]
10. LIGAND database for enzymes, compounds and reactions.
Goto S; Nishioka T; Kanehisa M
Nucleic Acids Res; 1999 Jan; 27(1):377-9. PubMed ID: 9847234
[TBL] [Abstract][Full Text] [Related]
11. Beyond the Second Coordination Sphere: Engineering Dirhodium Artificial Metalloenzymes To Enable Protein Control of Transition Metal Catalysis.
Lewis JC
Acc Chem Res; 2019 Mar; 52(3):576-584. PubMed ID: 30830755
[TBL] [Abstract][Full Text] [Related]
12. EHreact: Extended Hasse Diagrams for the Extraction and Scoring of Enzymatic Reaction Templates.
Heid E; Goldman S; Sankaranarayanan K; Coley CW; Flamm C; Green WH
J Chem Inf Model; 2021 Oct; 61(10):4949-4961. PubMed ID: 34587449
[TBL] [Abstract][Full Text] [Related]
13. Automatic determination of reaction mappings and reaction center information. 1. The imaginary transition state energy approach.
Körner R; Apostolakis J
J Chem Inf Model; 2008 Jun; 48(6):1181-9. PubMed ID: 18533713
[TBL] [Abstract][Full Text] [Related]
14. Ti-Catalyzed and -Mediated Oxidative Amination Reactions.
Tonks IA
Acc Chem Res; 2021 Sep; 54(17):3476-3490. PubMed ID: 34420307
[TBL] [Abstract][Full Text] [Related]
15. STON: exploring biological pathways using the SBGN standard and graph databases.
Touré V; Mazein A; Waltemath D; Balaur I; Saqi M; Henkel R; Pellet J; Auffray C
BMC Bioinformatics; 2016 Dec; 17(1):494. PubMed ID: 27919219
[TBL] [Abstract][Full Text] [Related]
16. Combined Graph/Relational Database Management System for Calculated Chemical Reaction Pathway Data.
Gimadiev T; Nugmanov R; Batyrshin D; Madzhidov T; Maeda S; Sidorov P; Varnek A
J Chem Inf Model; 2021 Feb; 61(2):554-559. PubMed ID: 33502186
[TBL] [Abstract][Full Text] [Related]
17. Metalloporphyrins as Catalytic Models for Studying Hydrogen and Oxygen Evolution and Oxygen Reduction Reactions.
Li X; Lei H; Xie L; Wang N; Zhang W; Cao R
Acc Chem Res; 2022 Mar; 55(6):878-892. PubMed ID: 35192330
[TBL] [Abstract][Full Text] [Related]
18. Mechanism of Hg-C protonolysis in the organomercurial lyase MerB.
Parks JM; Guo H; Momany C; Liang L; Miller SM; Summers AO; Smith JC
J Am Chem Soc; 2009 Sep; 131(37):13278-85. PubMed ID: 19719173
[TBL] [Abstract][Full Text] [Related]
19. MACiE: a database of enzyme reaction mechanisms.
Holliday GL; Bartlett GJ; Almonacid DE; O'Boyle NM; Murray-Rust P; Thornton JM; Mitchell JB
Bioinformatics; 2005 Dec; 21(23):4315-6. PubMed ID: 16188925
[TBL] [Abstract][Full Text] [Related]
20. The tetrahymena ribozyme cleaves a 5'-methylene phosphonate monoester approximately 10(2)-fold faster than a normal phosphate diester: implications for enzyme catalysis of phosphoryl transfer reactions.
Liao X; Anjaneyulu PS; Curley JF; Hsu M; Boehringer M; Caruthers MH; Piccirilli JA
Biochemistry; 2001 Sep; 40(37):10911-26. PubMed ID: 11551186
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]