367 related articles for article (PubMed ID: 36344848)
1. A structural biology community assessment of AlphaFold2 applications.
Akdel M; Pires DEV; Pardo EP; Jänes J; Zalevsky AO; Mészáros B; Bryant P; Good LL; Laskowski RA; Pozzati G; Shenoy A; Zhu W; Kundrotas P; Serra VR; Rodrigues CHM; Dunham AS; Burke D; Borkakoti N; Velankar S; Frost A; Basquin J; Lindorff-Larsen K; Bateman A; Kajava AV; Valencia A; Ovchinnikov S; Durairaj J; Ascher DB; Thornton JM; Davey NE; Stein A; Elofsson A; Croll TI; Beltrao P
Nat Struct Mol Biol; 2022 Nov; 29(11):1056-1067. PubMed ID: 36344848
[TBL] [Abstract][Full Text] [Related]
2. Blind assessment of monomeric AlphaFold2 protein structure models with experimental NMR data.
Li EH; Spaman LE; Tejero R; Janet Huang Y; Ramelot TA; Fraga KJ; Prestegard JH; Kennedy MA; Montelione GT
J Magn Reson; 2023 Jul; 352():107481. PubMed ID: 37257257
[TBL] [Abstract][Full Text] [Related]
3. AlphaFold2 and its applications in the fields of biology and medicine.
Yang Z; Zeng X; Zhao Y; Chen R
Signal Transduct Target Ther; 2023 Mar; 8(1):115. PubMed ID: 36918529
[TBL] [Abstract][Full Text] [Related]
4. Exploring AlphaFold2's Performance on Predicting Amino Acid Side-Chain Conformations and Its Utility in Crystal Structure Determination of B318L Protein.
Zhao H; Zhang H; She Z; Gao Z; Wang Q; Geng Z; Dong Y
Int J Mol Sci; 2023 Feb; 24(3):. PubMed ID: 36769074
[TBL] [Abstract][Full Text] [Related]
5. Digging into the 3D Structure Predictions of AlphaFold2 with Low Confidence: Disorder and Beyond.
Bruley A; Mornon JP; Duprat E; Callebaut I
Biomolecules; 2022 Oct; 12(10):. PubMed ID: 36291675
[TBL] [Abstract][Full Text] [Related]
6. How AlphaFold2 shaped the structural coverage of the human transmembrane proteome.
Jambrich MA; Tusnady GE; Dobson L
Sci Rep; 2023 Nov; 13(1):20283. PubMed ID: 37985809
[TBL] [Abstract][Full Text] [Related]
7. The impact of AI-based modeling on the accuracy of protein assembly prediction: Insights from CASP15.
Ozden B; Kryshtafovych A; Karaca E
Proteins; 2023 Dec; 91(12):1636-1657. PubMed ID: 37861057
[TBL] [Abstract][Full Text] [Related]
8. Overview of AlphaFold2 and breakthroughs in overcoming its limitations.
Wang L; Wen Z; Liu SW; Zhang L; Finley C; Lee HJ; Fan HS
Comput Biol Med; 2024 Jun; 176():108620. PubMed ID: 38761500
[TBL] [Abstract][Full Text] [Related]
9. Comprehensive Collection and Prediction of ABC Transmembrane Protein Structures in the AI Era of Structural Biology.
Tordai H; Suhajda E; Sillitoe I; Nair S; Varadi M; Hegedus T
Int J Mol Sci; 2022 Aug; 23(16):. PubMed ID: 36012140
[TBL] [Abstract][Full Text] [Related]
10. Complementing machine learning-based structure predictions with native mass spectrometry.
Allison TM; Degiacomi MT; Marklund EG; Jovine L; Elofsson A; Benesch JLP; Landreh M
Protein Sci; 2022 Jun; 31(6):e4333. PubMed ID: 35634779
[TBL] [Abstract][Full Text] [Related]
11. How accurately can one predict drug binding modes using AlphaFold models?
Karelina M; Noh JJ; Dror RO
Elife; 2023 Dec; 12():. PubMed ID: 38131311
[TBL] [Abstract][Full Text] [Related]
12. Modeling Flexible Protein Structure With AlphaFold2 and Crosslinking Mass Spectrometry.
Manalastas-Cantos K; Adoni KR; Pfeifer M; Märtens B; Grünewald K; Thalassinos K; Topf M
Mol Cell Proteomics; 2024 Mar; 23(3):100724. PubMed ID: 38266916
[TBL] [Abstract][Full Text] [Related]
13. Assessment of AlphaFold2 for Human Proteins via Residue Solvent Exposure.
Bæk KT; Kepp KP
J Chem Inf Model; 2022 Jul; 62(14):3391-3400. PubMed ID: 35785970
[TBL] [Abstract][Full Text] [Related]
14. Outer membrane β-barrel structure prediction through the lens of AlphaFold2.
Topitsch A; Schwede T; Pereira J
Proteins; 2024 Jan; 92(1):3-14. PubMed ID: 37465978
[TBL] [Abstract][Full Text] [Related]
15. Sampling alternative conformational states of transporters and receptors with AlphaFold2.
Del Alamo D; Sala D; Mchaourab HS; Meiler J
Elife; 2022 Mar; 11():. PubMed ID: 35238773
[TBL] [Abstract][Full Text] [Related]
16. AlphaFold2 models indicate that protein sequence determines both structure and dynamics.
Guo HB; Perminov A; Bekele S; Kedziora G; Farajollahi S; Varaljay V; Hinkle K; Molinero V; Meister K; Hung C; Dennis P; Kelley-Loughnane N; Berry R
Sci Rep; 2022 Jun; 12(1):10696. PubMed ID: 35739160
[TBL] [Abstract][Full Text] [Related]
17. A comparative study of protein structure prediction tools for challenging targets: Snake venom toxins.
Kalogeropoulos K; Bohn MF; Jenkins DE; Ledergerber J; Sørensen CV; Hofmann N; Wade J; Fryer T; Thi Tuyet Nguyen G; Auf dem Keller U; Laustsen AH; Jenkins TP
Toxicon; 2024 Feb; 238():107559. PubMed ID: 38113945
[TBL] [Abstract][Full Text] [Related]
18. Structural validation and assessment of AlphaFold2 predictions for centrosomal and centriolar proteins and their complexes.
van Breugel M; Rosa E Silva I; Andreeva A
Commun Biol; 2022 Apr; 5(1):312. PubMed ID: 35383272
[TBL] [Abstract][Full Text] [Related]
19. Conservation of Hot Spots and Ligand Binding Sites in Protein Models by AlphaFold2.
Bekar-Cesaretli AA; Khan O; Nguyen T; Kozakov D; Joseph-Mccarthy D; Vajda S
J Chem Inf Model; 2024 Feb; 64(3):960-973. PubMed ID: 38253327
[TBL] [Abstract][Full Text] [Related]
20. Benchmarking Refined and Unrefined AlphaFold2 Structures for Hit Discovery.
Zhang Y; Vass M; Shi D; Abualrous E; Chambers JM; Chopra N; Higgs C; Kasavajhala K; Li H; Nandekar P; Sato H; Miller EB; Repasky MP; Jerome SV
J Chem Inf Model; 2023 Mar; 63(6):1656-1667. PubMed ID: 36897766
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
