These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
159 related articles for article (PubMed ID: 36344928)
1. SparkEC: speeding up alignment-based DNA error correction tools. Expósito RR; Martínez-Sánchez M; Touriño J BMC Bioinformatics; 2022 Nov; 23(1):464. PubMed ID: 36344928 [TBL] [Abstract][Full Text] [Related]
2. SeQual-Stream: approaching stream processing to quality control of NGS datasets. Castellanos-Rodríguez Ó; Expósito RR; Touriño J BMC Bioinformatics; 2023 Oct; 24(1):403. PubMed ID: 37891497 [TBL] [Abstract][Full Text] [Related]
3. CARE 2.0: reducing false-positive sequencing error corrections using machine learning. Kallenborn F; Cascitti J; Schmidt B BMC Bioinformatics; 2022 Jun; 23(1):227. PubMed ID: 35698033 [TBL] [Abstract][Full Text] [Related]
4. EC: an efficient error correction algorithm for short reads. Saha S; Rajasekaran S BMC Bioinformatics; 2015; 16 Suppl 17(Suppl 17):S2. PubMed ID: 26678663 [TBL] [Abstract][Full Text] [Related]
5. A comparative study of k-spectrum-based error correction methods for next-generation sequencing data analysis. Akogwu I; Wang N; Zhang C; Gong P Hum Genomics; 2016 Jul; 10 Suppl 2(Suppl 2):20. PubMed ID: 27461106 [TBL] [Abstract][Full Text] [Related]
6. Blue: correcting sequencing errors using consensus and context. Greenfield P; Duesing K; Papanicolaou A; Bauer DC Bioinformatics; 2014 Oct; 30(19):2723-32. PubMed ID: 24919879 [TBL] [Abstract][Full Text] [Related]
7. SparkBWA: Speeding Up the Alignment of High-Throughput DNA Sequencing Data. Abuín JM; Pichel JC; Pena TF; Amigo J PLoS One; 2016; 11(5):e0155461. PubMed ID: 27182962 [TBL] [Abstract][Full Text] [Related]
8. Lerna: transformer architectures for configuring error correction tools for short- and long-read genome sequencing. Sharma A; Jain P; Mahgoub A; Zhou Z; Mahadik K; Chaterji S BMC Bioinformatics; 2022 Jan; 23(1):25. PubMed ID: 34991450 [TBL] [Abstract][Full Text] [Related]
9. SparkGA2: Production-quality memory-efficient Apache Spark based genome analysis framework. Mushtaq H; Ahmed N; Al-Ars Z PLoS One; 2019; 14(12):e0224784. PubMed ID: 31805063 [TBL] [Abstract][Full Text] [Related]
10. Repeat-aware modeling and correction of short read errors. Yang X; Aluru S; Dorman KS BMC Bioinformatics; 2011 Feb; 12 Suppl 1(Suppl 1):S52. PubMed ID: 21342585 [TBL] [Abstract][Full Text] [Related]
18. A Survey of Software and Hardware Approaches to Performing Read Alignment in Next Generation Sequencing. Al Kawam A; Khatri S; Datta A IEEE/ACM Trans Comput Biol Bioinform; 2017; 14(6):1202-1213. PubMed ID: 27362989 [TBL] [Abstract][Full Text] [Related]
19. A parallel algorithm for error correction in high-throughput short-read data on CUDA-enabled graphics hardware. Shi H; Schmidt B; Liu W; Müller-Wittig W J Comput Biol; 2010 Apr; 17(4):603-15. PubMed ID: 20426693 [TBL] [Abstract][Full Text] [Related]
20. LoRDEC: accurate and efficient long read error correction. Salmela L; Rivals E Bioinformatics; 2014 Dec; 30(24):3506-14. PubMed ID: 25165095 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]