BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

173 related articles for article (PubMed ID: 36350674)

  • 21. Design and Analysis of Massively Parallel Reporter Assays Using FORECAST.
    Gilliot PA; Gorochowski TE
    Methods Mol Biol; 2023; 2553():41-56. PubMed ID: 36227538
    [TBL] [Abstract][Full Text] [Related]  

  • 22. MPRAnalyze: statistical framework for massively parallel reporter assays.
    Ashuach T; Fischer DS; Kreimer A; Ahituv N; Theis FJ; Yosef N
    Genome Biol; 2019 Sep; 20(1):183. PubMed ID: 31477158
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Linear models enable powerful differential activity analysis in massively parallel reporter assays.
    Myint L; Avramopoulos DG; Goff LA; Hansen KD
    BMC Genomics; 2019 Mar; 20(1):209. PubMed ID: 30866806
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Optimizing sequence design strategies for perturbation MPRAs: a computational evaluation framework.
    Liu J; Ashuach T; Inoue F; Ahituv N; Yosef N; Kreimer A
    Nucleic Acids Res; 2024 Feb; 52(4):1613-1627. PubMed ID: 38296821
    [TBL] [Abstract][Full Text] [Related]  

  • 25. TSVM: Transfer Support Vector Machine for Predicting MPRA Validated Regulatory Variants.
    Li M; Zhou S; Liu T; Liu C; Zang M; Wang Q
    IEEE/ACM Trans Comput Biol Bioinform; 2024; 21(3):472-479. PubMed ID: 38451770
    [TBL] [Abstract][Full Text] [Related]  

  • 26. TVAR: assessing tissue-specific functional effects of non-coding variants with deep learning.
    Yang H; Chen R; Wang Q; Wei Q; Ji Y; Zhong X; Li B
    Bioinformatics; 2022 Oct; 38(20):4697-4704. PubMed ID: 36063453
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Characterization of enhancer activity in early human neurodevelopment using Massively Parallel Reporter Assay (MPRA) and forebrain organoids.
    Capauto D; Wang Y; Wu F; Norton S; Mariani J; Inoue F; Crawford GE; Ahituv N; Abyzov A; Vaccarino FM
    Sci Rep; 2024 Feb; 14(1):3936. PubMed ID: 38365907
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Optimized PCR conditions minimizing the formation of chimeric DNA molecules from MPRA plasmid libraries.
    Omelina ES; Ivankin AV; Letiagina AE; Pindyurin AV
    BMC Genomics; 2019 Jul; 20(Suppl 7):536. PubMed ID: 31291895
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Best practices for perturbation MPRA-a computational evaluation framework of sequence design strategies.
    Liu J; Ashuach T; Inoue F; Ahituv N; Yosef N; Kreimer A
    bioRxiv; 2023 Sep; ():. PubMed ID: 37808807
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Systematic Functional Dissection of Common Genetic Variation Affecting Red Blood Cell Traits.
    Ulirsch JC; Nandakumar SK; Wang L; Giani FC; Zhang X; Rogov P; Melnikov A; McDonel P; Do R; Mikkelsen TS; Sankaran VG
    Cell; 2016 Jun; 165(6):1530-1545. PubMed ID: 27259154
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Understanding how cis-regulatory function is encoded in DNA sequence using massively parallel reporter assays and designed sequences.
    White MA
    Genomics; 2015 Sep; 106(3):165-170. PubMed ID: 26072432
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Using a modular massively parallel reporter assay to discover context-specific regulatory grammars in type 2 diabetes.
    Tovar A; Kyono Y; Nishino K; Bose M; Varshney A; Parker SCJ; Kitzman JO
    bioRxiv; 2023 Oct; ():. PubMed ID: 37873175
    [TBL] [Abstract][Full Text] [Related]  

  • 33. High-Throughput Analysis of Retinal Cis-Regulatory Networks by Massively Parallel Reporter Assays.
    Oh IY; Chen S
    Adv Exp Med Biol; 2019; 1185():359-364. PubMed ID: 31884638
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Massively Parallel Analysis of Regulatory RNA Sequences.
    Rabani M
    Methods Mol Biol; 2021; 2218():355-365. PubMed ID: 33606245
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Effective design and inference for cell sorting and sequencing based massively parallel reporter assays.
    Gilliot PA; Gorochowski TE
    Bioinformatics; 2023 May; 39(5):. PubMed ID: 37084251
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Massively Parallel Reporter Assays: Defining Functional Psychiatric Genetic Variants Across Biological Contexts.
    Mulvey B; Lagunas T; Dougherty JD
    Biol Psychiatry; 2021 Jan; 89(1):76-89. PubMed ID: 32843144
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Genome-wide prediction of cis-regulatory regions using supervised deep learning methods.
    Li Y; Shi W; Wasserman WW
    BMC Bioinformatics; 2018 May; 19(1):202. PubMed ID: 29855387
    [TBL] [Abstract][Full Text] [Related]  

  • 38. ReFeaFi: Genome-wide prediction of regulatory elements driving transcription initiation.
    Umarov R; Li Y; Arakawa T; Takizawa S; Gao X; Arner E
    PLoS Comput Biol; 2021 Sep; 17(9):e1009376. PubMed ID: 34491989
    [TBL] [Abstract][Full Text] [Related]  

  • 39. MPRAdecoder: Processing of the Raw MPRA Data With
    Letiagina AE; Omelina ES; Ivankin AV; Pindyurin AV
    Front Genet; 2021; 12():618189. PubMed ID: 34046055
    [TBL] [Abstract][Full Text] [Related]  

  • 40. A new computational method to predict transcriptional activity of a DNA sequence from diverse datasets of massively parallel reporter assays.
    Liu Y; Irie T; Yada T; Suzuki Y
    Nucleic Acids Res; 2017 Jul; 45(13):e124. PubMed ID: 28531296
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 9.