184 related articles for article (PubMed ID: 36352786)
1. Template-free prediction of a new monotopic membrane protein fold and assembly by AlphaFold2.
Gulsevin A; Han B; Porta JC; Mchaourab HS; Meiler J; Kenworthy AK
Biophys J; 2023 Jun; 122(11):2041-2052. PubMed ID: 36352786
[TBL] [Abstract][Full Text] [Related]
2. Outer membrane β-barrel structure prediction through the lens of AlphaFold2.
Topitsch A; Schwede T; Pereira J
Proteins; 2024 Jan; 92(1):3-14. PubMed ID: 37465978
[TBL] [Abstract][Full Text] [Related]
3. Co-evolution at protein-protein interfaces guides inference of stoichiometry of oligomeric protein complexes by de novo structure prediction.
Kilian M; Bischofs IB
Mol Microbiol; 2023 Nov; 120(5):763-782. PubMed ID: 37777474
[TBL] [Abstract][Full Text] [Related]
4. How AlphaFold2 shaped the structural coverage of the human transmembrane proteome.
Jambrich MA; Tusnady GE; Dobson L
Sci Rep; 2023 Nov; 13(1):20283. PubMed ID: 37985809
[TBL] [Abstract][Full Text] [Related]
5. Blind assessment of monomeric AlphaFold2 protein structure models with experimental NMR data.
Li EH; Spaman LE; Tejero R; Janet Huang Y; Ramelot TA; Fraga KJ; Prestegard JH; Kennedy MA; Montelione GT
J Magn Reson; 2023 Jul; 352():107481. PubMed ID: 37257257
[TBL] [Abstract][Full Text] [Related]
6. AlphaFold2 and its applications in the fields of biology and medicine.
Yang Z; Zeng X; Zhao Y; Chen R
Signal Transduct Target Ther; 2023 Mar; 8(1):115. PubMed ID: 36918529
[TBL] [Abstract][Full Text] [Related]
7. A Perspective on the Prospective Use of AI in Protein Structure Prediction.
Versini R; Sritharan S; Aykac Fas B; Tubiana T; Aimeur SZ; Henri J; Erard M; Nüsse O; Andreani J; Baaden M; Fuchs P; Galochkina T; Chatzigoulas A; Cournia Z; Santuz H; Sacquin-Mora S; Taly A
J Chem Inf Model; 2024 Jan; 64(1):26-41. PubMed ID: 38124369
[TBL] [Abstract][Full Text] [Related]
8. The impact of AI-based modeling on the accuracy of protein assembly prediction: Insights from CASP15.
Ozden B; Kryshtafovych A; Karaca E
Proteins; 2023 Dec; 91(12):1636-1657. PubMed ID: 37861057
[TBL] [Abstract][Full Text] [Related]
9. Sampling alternative conformational states of transporters and receptors with AlphaFold2.
Del Alamo D; Sala D; Mchaourab HS; Meiler J
Elife; 2022 Mar; 11():. PubMed ID: 35238773
[TBL] [Abstract][Full Text] [Related]
10. Assessment of AlphaFold2 for Human Proteins via Residue Solvent Exposure.
Bæk KT; Kepp KP
J Chem Inf Model; 2022 Jul; 62(14):3391-3400. PubMed ID: 35785970
[TBL] [Abstract][Full Text] [Related]
11. AlphaFold2 reveals commonalities and novelties in protein structure space for 21 model organisms.
Bordin N; Sillitoe I; Nallapareddy V; Rauer C; Lam SD; Waman VP; Sen N; Heinzinger M; Littmann M; Kim S; Velankar S; Steinegger M; Rost B; Orengo C
Commun Biol; 2023 Feb; 6(1):160. PubMed ID: 36755055
[TBL] [Abstract][Full Text] [Related]
12. AlphaFold2 models indicate that protein sequence determines both structure and dynamics.
Guo HB; Perminov A; Bekele S; Kedziora G; Farajollahi S; Varaljay V; Hinkle K; Molinero V; Meister K; Hung C; Dennis P; Kelley-Loughnane N; Berry R
Sci Rep; 2022 Jun; 12(1):10696. PubMed ID: 35739160
[TBL] [Abstract][Full Text] [Related]
13. Digging into the 3D Structure Predictions of AlphaFold2 with Low Confidence: Disorder and Beyond.
Bruley A; Mornon JP; Duprat E; Callebaut I
Biomolecules; 2022 Oct; 12(10):. PubMed ID: 36291675
[TBL] [Abstract][Full Text] [Related]
14. Improved protein structure prediction with trRosettaX2, AlphaFold2, and optimized MSAs in CASP15.
Peng Z; Wang W; Wei H; Li X; Yang J
Proteins; 2023 Dec; 91(12):1704-1711. PubMed ID: 37565699
[TBL] [Abstract][Full Text] [Related]
15. A structural biology community assessment of AlphaFold2 applications.
Akdel M; Pires DEV; Pardo EP; Jänes J; Zalevsky AO; Mészáros B; Bryant P; Good LL; Laskowski RA; Pozzati G; Shenoy A; Zhu W; Kundrotas P; Serra VR; Rodrigues CHM; Dunham AS; Burke D; Borkakoti N; Velankar S; Frost A; Basquin J; Lindorff-Larsen K; Bateman A; Kajava AV; Valencia A; Ovchinnikov S; Durairaj J; Ascher DB; Thornton JM; Davey NE; Stein A; Elofsson A; Croll TI; Beltrao P
Nat Struct Mol Biol; 2022 Nov; 29(11):1056-1067. PubMed ID: 36344848
[TBL] [Abstract][Full Text] [Related]
16. Modeling Flexible Protein Structure With AlphaFold2 and Crosslinking Mass Spectrometry.
Manalastas-Cantos K; Adoni KR; Pfeifer M; Märtens B; Grünewald K; Thalassinos K; Topf M
Mol Cell Proteomics; 2024 Mar; 23(3):100724. PubMed ID: 38266916
[TBL] [Abstract][Full Text] [Related]
17. Exploring AlphaFold2's Performance on Predicting Amino Acid Side-Chain Conformations and Its Utility in Crystal Structure Determination of B318L Protein.
Zhao H; Zhang H; She Z; Gao Z; Wang Q; Geng Z; Dong Y
Int J Mol Sci; 2023 Feb; 24(3):. PubMed ID: 36769074
[TBL] [Abstract][Full Text] [Related]
18. Complementing machine learning-based structure predictions with native mass spectrometry.
Allison TM; Degiacomi MT; Marklund EG; Jovine L; Elofsson A; Benesch JLP; Landreh M
Protein Sci; 2022 Jun; 31(6):e4333. PubMed ID: 35634779
[TBL] [Abstract][Full Text] [Related]
19. Enhanced antibody-antigen structure prediction from molecular docking using AlphaFold2.
Gaudreault F; Corbeil CR; Sulea T
Sci Rep; 2023 Sep; 13(1):15107. PubMed ID: 37704686
[TBL] [Abstract][Full Text] [Related]
20. Assessment of the CASP14 assembly predictions.
Ozden B; Kryshtafovych A; Karaca E
Proteins; 2021 Dec; 89(12):1787-1799. PubMed ID: 34337786
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]