These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

184 related articles for article (PubMed ID: 36352786)

  • 21. Benchmarking Refined and Unrefined AlphaFold2 Structures for Hit Discovery.
    Zhang Y; Vass M; Shi D; Abualrous E; Chambers JM; Chopra N; Higgs C; Kasavajhala K; Li H; Nandekar P; Sato H; Miller EB; Repasky MP; Jerome SV
    J Chem Inf Model; 2023 Mar; 63(6):1656-1667. PubMed ID: 36897766
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Conservation of Hot Spots and Ligand Binding Sites in Protein Models by AlphaFold2.
    Bekar-Cesaretli AA; Khan O; Nguyen T; Kozakov D; Joseph-Mccarthy D; Vajda S
    J Chem Inf Model; 2024 Feb; 64(3):960-973. PubMed ID: 38253327
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Accurate prediction by AlphaFold2 for ligand binding in a reductive dehalogenase and implications for PFAS (per- and polyfluoroalkyl substance) biodegradation.
    Guo HB; Varaljay VA; Kedziora G; Taylor K; Farajollahi S; Lombardo N; Harper E; Hung C; Gross M; Perminov A; Dennis P; Kelley-Loughnane N; Berry R
    Sci Rep; 2023 Mar; 13(1):4082. PubMed ID: 36906658
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Overview of AlphaFold2 and breakthroughs in overcoming its limitations.
    Wang L; Wen Z; Liu SW; Zhang L; Finley C; Lee HJ; Fan HS
    Comput Biol Med; 2024 Jun; 176():108620. PubMed ID: 38761500
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Deep learning-driven insights into super protein complexes for outer membrane protein biogenesis in bacteria.
    Gao M; Nakajima An D; Skolnick J
    Elife; 2022 Dec; 11():. PubMed ID: 36576775
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Exploring Host-Binding Machineries of Mycobacteriophages with AlphaFold2.
    Cambillau C; Goulet A
    J Virol; 2023 Mar; 97(3):e0179322. PubMed ID: 36916948
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Improved structure-related prediction for insufficient homologous proteins using MSA enhancement and pre-trained language model.
    Meng Q; Guo F; Tang J
    Brief Bioinform; 2023 Jul; 24(4):. PubMed ID: 37321965
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Improved multimer prediction using massive sampling with AlphaFold in CASP15.
    Wallner B
    Proteins; 2023 Dec; 91(12):1734-1746. PubMed ID: 37548092
    [TBL] [Abstract][Full Text] [Related]  

  • 29. AlphaFold2-multimer guided high-accuracy prediction of typical and atypical ATG8-binding motifs.
    Ibrahim T; Khandare V; Mirkin FG; Tumtas Y; Bubeck D; Bozkurt TO
    PLoS Biol; 2023 Feb; 21(2):e3001962. PubMed ID: 36753519
    [TBL] [Abstract][Full Text] [Related]  

  • 30. De novo protein design by inversion of the AlphaFold structure prediction network.
    Goverde CA; Wolf B; Khakzad H; Rosset S; Correia BE
    Protein Sci; 2023 Jun; 32(6):e4653. PubMed ID: 37165539
    [TBL] [Abstract][Full Text] [Related]  

  • 31. A comparative study of protein structure prediction tools for challenging targets: Snake venom toxins.
    Kalogeropoulos K; Bohn MF; Jenkins DE; Ledergerber J; Sørensen CV; Hofmann N; Wade J; Fryer T; Thi Tuyet Nguyen G; Auf dem Keller U; Laustsen AH; Jenkins TP
    Toxicon; 2024 Feb; 238():107559. PubMed ID: 38113945
    [TBL] [Abstract][Full Text] [Related]  

  • 32. TmAlphaFold database: membrane localization and evaluation of AlphaFold2 predicted alpha-helical transmembrane protein structures.
    Dobson L; Szekeres LI; Gerdán C; Langó T; Zeke A; Tusnády GE
    Nucleic Acids Res; 2023 Jan; 51(D1):D517-D522. PubMed ID: 36318239
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Structural analysis of the P132L disease mutation in caveolin-1 reveals its role in the assembly of oligomeric complexes.
    Han B; Gulsevin A; Connolly S; Wang T; Meyer B; Porta J; Tiwari A; Deng A; Chang L; Peskova Y; Mchaourab HS; Karakas E; Ohi MD; Meiler J; Kenworthy AK
    J Biol Chem; 2023 Apr; 299(4):104574. PubMed ID: 36870682
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Comprehensive Collection and Prediction of ABC Transmembrane Protein Structures in the AI Era of Structural Biology.
    Tordai H; Suhajda E; Sillitoe I; Nair S; Varadi M; Hegedus T
    Int J Mol Sci; 2022 Aug; 23(16):. PubMed ID: 36012140
    [TBL] [Abstract][Full Text] [Related]  

  • 35. AlphaFold2: A versatile tool to predict the appearance of functional adaptations in evolution: Profilin interactions in uncultured Asgard archaea: Profilin interactions in uncultured Asgard archaea.
    Ponlachantra K; Suginta W; Robinson RC; Kitaoku Y
    Bioessays; 2023 Feb; 45(2):e2200119. PubMed ID: 36461738
    [TBL] [Abstract][Full Text] [Related]  

  • 36. How accurately can one predict drug binding modes using AlphaFold models?
    Karelina M; Noh JJ; Dror RO
    Elife; 2023 Dec; 12():. PubMed ID: 38131311
    [TBL] [Abstract][Full Text] [Related]  

  • 37. AlphaFold2 for Protein Structure Prediction: Best Practices and Critical Analyses.
    Radjasandirane R; de Brevern AG
    Methods Mol Biol; 2024; 2836():235-252. PubMed ID: 38995544
    [TBL] [Abstract][Full Text] [Related]  

  • 38. AI-based AlphaFold2 significantly expands the structural space of the autophagy pathway.
    Malhotra N; Khatri S; Kumar A; Arun A; Daripa P; Fatihi S; Venkadesan S; Jain N; Thukral L
    Autophagy; 2023 Dec; 19(12):3201-3220. PubMed ID: 37516933
    [TBL] [Abstract][Full Text] [Related]  

  • 39. An AlphaFold2 map of the 53BP1 pathway identifies a direct SHLD3-RIF1 interaction critical for shieldin activity.
    Sifri C; Hoeg L; Durocher D; Setiaputra D
    EMBO Rep; 2023 Aug; 24(8):e56834. PubMed ID: 37306046
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Combined prediction and design reveals the target recognition mechanism of an intrinsically disordered protein interaction domain.
    Hu X; Xu Y; Wang C; Liu Y; Zhang L; Zhang J; Wang W; Chen Q; Liu H
    Proc Natl Acad Sci U S A; 2023 Sep; 120(39):e2305603120. PubMed ID: 37722056
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 10.