BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

169 related articles for article (PubMed ID: 36374853)

  • 21. StonPy: a tool to parse and query collections of SBGN maps in a graph database.
    Rougny A; Balaur I; Luna A; Mazein A
    Bioinformatics; 2023 Mar; 39(3):. PubMed ID: 36897014
    [TBL] [Abstract][Full Text] [Related]  

  • 22. CellPublisher: a web platform for the intuitive visualization and sharing of metabolic, signalling and regulatory pathways.
    Flórez LA; Lammers CR; Michna R; Stülke J
    Bioinformatics; 2010 Dec; 26(23):2997-9. PubMed ID: 20947526
    [TBL] [Abstract][Full Text] [Related]  

  • 23. libsbmljs-Enabling web-based SBML tools.
    Medley JK; Hellerstein J; Sauro HM
    Biosystems; 2020 Jul; 195():104150. PubMed ID: 32339626
    [TBL] [Abstract][Full Text] [Related]  

  • 24. SBML-SAT: a systems biology markup language (SBML) based sensitivity analysis tool.
    Zi Z; Zheng Y; Rundell AE; Klipp E
    BMC Bioinformatics; 2008 Aug; 9():342. PubMed ID: 18706080
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Sustainable model building the role of standards and biological semantics.
    Krause F; Schulz M; Swainston N; Liebermeister W
    Methods Enzymol; 2011; 500():371-95. PubMed ID: 21943907
    [TBL] [Abstract][Full Text] [Related]  

  • 26. SBML Level 3 package: Render, Version 1, Release 1.
    Bergmann FT; Keating SM; Gauges R; Sahle S; Wengler K
    J Integr Bioinform; 2018 Apr; 15(1):. PubMed ID: 29605822
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Automated inference of Boolean models from molecular interaction maps using CaSQ.
    Aghamiri SS; Singh V; Naldi A; Helikar T; Soliman S; Niarakis A
    Bioinformatics; 2020 Aug; 36(16):4473-4482. PubMed ID: 32403123
    [TBL] [Abstract][Full Text] [Related]  

  • 28. sbgntikz-a TikZ library to draw SBGN maps.
    Rougny A
    Bioinformatics; 2019 Nov; 35(21):4499-4500. PubMed ID: 31070720
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Payao: a community platform for SBML pathway model curation.
    Matsuoka Y; Ghosh S; Kikuchi N; Kitano H
    Bioinformatics; 2010 May; 26(10):1381-3. PubMed ID: 20371497
    [TBL] [Abstract][Full Text] [Related]  

  • 30. A model diagram layout extension for SBML.
    Gauges R; Rost U; Sahle S; Wegner K
    Bioinformatics; 2006 Aug; 22(15):1879-85. PubMed ID: 16709586
    [TBL] [Abstract][Full Text] [Related]  

  • 31. An integrated network visualization framework towards metabolic engineering applications.
    Noronha A; Vilaça P; Rocha M
    BMC Bioinformatics; 2014 Dec; 15(1):420. PubMed ID: 25547011
    [TBL] [Abstract][Full Text] [Related]  

  • 32. SBML to bond graphs: From conversion to composition.
    Shahidi N; Pan M; Tran K; Crampin EJ; Nickerson DP
    Math Biosci; 2022 Oct; 352():108901. PubMed ID: 36096376
    [TBL] [Abstract][Full Text] [Related]  

  • 33. SBML-PET-MPI: a parallel parameter estimation tool for Systems Biology Markup Language based models.
    Zi Z
    Bioinformatics; 2011 Apr; 27(7):1028-9. PubMed ID: 21303862
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Software support for SBGN maps: SBGN-ML and LibSBGN.
    van Iersel MP; Villéger AC; Czauderna T; Boyd SE; Bergmann FT; Luna A; Demir E; Sorokin A; Dogrusoz U; Matsuoka Y; Funahashi A; Aladjem MI; Mi H; Moodie SL; Kitano H; Le Novère N; Schreiber F
    Bioinformatics; 2012 Aug; 28(15):2016-21. PubMed ID: 22581176
    [TBL] [Abstract][Full Text] [Related]  

  • 35. The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2.
    Hucka M; Bergmann FT; Chaouiya C; Dräger A; Hoops S; Keating SM; König M; Novère NL; Myers CJ; Olivier BG; Sahle S; Schaff JC; Sheriff R; Smith LP; Waltemath D; Wilkinson DJ; Zhang F
    J Integr Bioinform; 2019 Jun; 16(2):. PubMed ID: 31219795
    [TBL] [Abstract][Full Text] [Related]  

  • 36. OptFlux: an open-source software platform for in silico metabolic engineering.
    Rocha I; Maia P; Evangelista P; Vilaça P; Soares S; Pinto JP; Nielsen J; Patil KR; Ferreira EC; Rocha M
    BMC Syst Biol; 2010 Apr; 4():45. PubMed ID: 20403172
    [TBL] [Abstract][Full Text] [Related]  

  • 37. JSBML: a flexible Java library for working with SBML.
    Dräger A; Rodriguez N; Dumousseau M; Dörr A; Wrzodek C; Le Novère N; Zell A; Hucka M
    Bioinformatics; 2011 Aug; 27(15):2167-8. PubMed ID: 21697129
    [TBL] [Abstract][Full Text] [Related]  

  • 38. STON: exploring biological pathways using the SBGN standard and graph databases.
    Touré V; Mazein A; Waltemath D; Balaur I; Saqi M; Henkel R; Pellet J; Auffray C
    BMC Bioinformatics; 2016 Dec; 17(1):494. PubMed ID: 27919219
    [TBL] [Abstract][Full Text] [Related]  

  • 39. An online model composition tool for system biology models.
    Coskun SA; Cicek AE; Lai N; Dash RK; Ozsoyoglu ZM; Ozsoyoglu G
    BMC Syst Biol; 2013 Sep; 7():88. PubMed ID: 24006914
    [TBL] [Abstract][Full Text] [Related]  

  • 40. GRN2SBML: automated encoding and annotation of inferred gene regulatory networks complying with SBML.
    Vlaic S; Hoffmann B; Kupfer P; Weber M; Dräger A
    Bioinformatics; 2013 Sep; 29(17):2216-7. PubMed ID: 23803467
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 9.